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WormBase Tree Display for Gene: WBGene00078754

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Name Class

WBGene00078754SMapS_parentSequenceCrem_Contig12
IdentityVersion1
NameSequence_nameCRE04673
Molecular_nameCRE04673
CRE04673.1
RP37840
Public_nameCRE04673
SpeciesCaenorhabditis remanei
HistoryVersion_change103 Jul 2008 11:46:53WBPerson4055EventCreated
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000000411.8504From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
12.63From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
13.4096From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (53)
WBls:00000270.360635From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
10.1041From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
13.7343From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
7.54233From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
7.93534From_analysisRNASeq.remanei.WBls:0000027.control_mean
8.82321From_analysisRNASeq.remanei.WBls:0000027.control_median
WBls:00000380.730343From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
5.95817From_analysisRNASeq.remanei.WBls:0000038.control_mean
7.85628From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
9.28788From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:000004111.1485From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
11.2099From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
3.95223From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
4.59358From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
5.06959From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
7.24984From_analysisRNASeq.remanei.WBls:0000041.control_median
7.56732From_analysisRNASeq.remanei.WBls:0000041.control_mean
9.43009From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
WBls:0000063 (12)
WBls:00001015.31927From_analysisRNASeq.remanei.total_over_all_stages.control_median
6.23325From_analysisRNASeq.remanei.total_over_all_stages.control_mean
Ortholog (40)
ParalogWBGene00057511Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00051355Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00052173Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00057740Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00060427Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00061566Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00063047Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00074922Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00064914Caenorhabditis remaneiFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: AMP-binding enzyme; Pyrrolo-quinoline quinone beta-propeller repeat; Quinoprotein alcohol dehydrogenase-like superfamily; WD40/YVTN repeat-like-containing domain superfamily; and AMP-dependent synthetase/ligase. Is an ortholog of C. elegans W09D6.1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE04673
Corresponding_transcriptCRE04673.1
Experimental_infoExpr_patternExpr1117902
Microarray_resultsGPL14146_CRE04673_1632-1691_0.851_22_A
GPL14146_CRE04673_1770-1829_0.846_25_C
GPL14146_CRE04673_949-1008_0.641_302_B
MethodGene