WormBase Tree Display for Gene: WBGene00078729

WBGene00078729 SMap: S_parent: Sequence: Crem_Contig12
  Identity: Version: 1
    Name: Sequence_name: CRE04504
      Molecular_name: CRE04504
        CRE04504.1
        RP47204
      Public_name: CRE04504
    Species: Caenorhabditis remanei
    History: Version_change: 1 03 Jul 2008 11:46:53 WBPerson4055 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000004 1.59858 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        2.1029 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        2.60721 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (42)
      WBls:0000027 0.615208 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        10.7611 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        3.71502 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        4.54779 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        6.81484 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
      WBls:0000038 0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        5.29788 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        7.20837 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        8.68527 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 0.486677 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        0.51308 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        0.531454 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        2.21465 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        2.5529 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        3.89784 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        4.459 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        5.42937 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 0.469472 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        1.07326 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
            RNASeq.remanei.WBls:0000063.control_median
        3.62146 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
      WBls:0000101 0.522267 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        2.24241 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (30)
    Paralog: WBGene00051150 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00054903 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00055542 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00061033 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00063540 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00064350 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00064758 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00066454 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00069761 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Hemopexin-like domain superfamily; Hemopexin-like repeats; Hemopexin; and Matrix metalloproteinase-A. Is an ortholog of C. elegans zmp-1. In C. elegans, zmp-1 is involved in basement membrane disassembly. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE04504
    Corresponding_transcript: CRE04504.1
  Experimental_info: Expr_pattern: Expr1102116
    Microarray_results: GPL14146_CRE04504_193-252_0.854_13_B
      GPL14146_CRE04504_314-373_0.928_2_C
      GPL14146_CRE04504_318-377_0.933_1_A
  Method: Gene