WormBase Tree Display for Gene: WBGene00068417

WBGene00068417 SMap: S_parent: Sequence: Crem_Contig106
  Identity: Version: 3
    Name: CGC_name: Cre-lin-49 From_analysis: Inferred_from_orthology
      Sequence_name: CRE16289
      Molecular_name: CRE16289
        CRE16289.1
        RP42132
      Other_name: cr01.sctg115.wum.9
      Public_name: Cre-lin-49
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:28 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:47 WBPerson2970 Name_change: CGC_name: Cre-lin-49
        3 03 Jul 2008 11:46:20 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE16289
                Other_name: cr01.sctg115.wum.9
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lin
    RNASeq_FPKM: WBls:0000004 28.46 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        29.4069 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        30.3539 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 0.657799 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        5.37868 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        5.66205 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        6.35816 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        7.05427 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        8.1406 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 1.37808 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        2.27385 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        2.68788 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        2.75558 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 14.927 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        15.4854 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        21.3861 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        23.319 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        24.637 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        7.33352 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        7.76877 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        8.46791 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 (12)
      WBls:0000101 10.245 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
        7.95469 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
    Ortholog (29)
    Paralog: WBGene00055189 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00085617 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00073027 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00076039 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00076264 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Enhancer of polycomb-like; Zinc finger, RING/FYVE/PHD-type; PHD-finger; PHD-zinc-finger like domain; Bromodomain-like superfamily; Zinc finger, PHD-type; Zinc finger, FYVE/PHD-type; Bromodomain; and Enhancer of polycomb-like, N-terminal. Is an ortholog of C. elegans lin-49. In C. elegans, lin-49 is involved in cell fate specification; maintenance of left/right asymmetry; and positive regulation of gene expression. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE16289
    Corresponding_transcript: CRE16289.1
    Other_sequence (35)
  Experimental_info: Expr_pattern: Expr1094316
      Expr1115347
    Microarray_results: GPL14146_CRE14382_1044-1103_0.954_1_A
      GPL14146_CRE16289_2281-2340_0.867_42_C
      GPL14146_CRE16289_3292-3351_0.941_4_B
      GPL14146_CRE16289_3407-3466_0.953_1_A
  Method: Gene