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WormBase Tree Display for Gene: WBGene00057742

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Name Class

WBGene00057742SMapS_parentSequenceCrem_Contig3
IdentityVersion3
NameCGC_nameCre-atx-3From_analysisInferred_from_orthology
Sequence_nameCRE19080
Molecular_nameCRE19080
CRE19080.1
RP39427
Other_namecr01.sctg10.wum.30
Public_nameCre-atx-3
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-atx-3
303 Jul 2008 11:45:13WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE19080
Other_namecr01.sctg10.wum.30
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classatx
RNASeq_FPKMWBls:000000426.5458From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
30.6156From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
34.6854From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:00000270.96106From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
2.58021From_analysisRNASeq.remanei.WBls:0000027.control_mean
2.81637From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
2.98411From_analysisRNASeq.remanei.WBls:0000027.control_median
3.15184From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
3.39157From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
WBls:00000380.973149From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
3.87096From_analysisRNASeq.remanei.WBls:0000038.control_mean
5.27911From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
5.36062From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:000004110.0257From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
10.2109From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
10.6098From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
22.7321From_analysisRNASeq.remanei.WBls:0000041.control_median
24.5041From_analysisRNASeq.remanei.WBls:0000041.control_mean
34.8544From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
39.2401From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
42.0837From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
WBls:0000063 (12)
WBls:000010110.7754From_analysisRNASeq.remanei.total_over_all_stages.control_mean
5.31987From_analysisRNASeq.remanei.total_over_all_stages.control_median
GO_annotation00153244
00153245
Ortholog (28)
Structured_descriptionAutomated_descriptionPredicted to enable cysteine-type deubiquitinase activity. Is an ortholog of C. elegans atx-3. In C. elegans, atx-3 is involved in chemical synaptic transmission.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE19080
Corresponding_transcriptCRE19080.1
Other_sequencePPC10479_1
CR00590
CRC03012_1
Experimental_infoExpr_patternExpr1092903
Microarray_resultsGPL14146_CRE19080_356-415_0.872_29_C
GPL14146_CRE19080_521-580_0.913_3_A
GPL14146_CRE19080_593-652_0.889_13_B
MethodGene