WormBase Tree Display for Gene: WBGene00055860

WBGene00055860 SMap: S_parent: Sequence: Crem_Contig12
  Identity: Version: 4
    Name: CGC_name: Cre-toca-2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE04651
      Molecular_name: CRE04651
        CRE04651.1
        RP30484
      Other_name: cr01.sctg5.wum.563
        cr01.sctg5.wum.563.2
      Public_name: Cre-toca-2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:44:59 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE04651
                Other_name: cr01.sctg5.wum.563
        3 03 Jul 2008 11:48:44 WBPerson4055 Event: Acquires_merge: WBGene00055861
              Name_change: Other_name: cr01.sctg5.wum.563.2
        4 04 Jul 2008 11:06:36 WBPerson4055 Name_change: CGC_name: Cre-toca-2
      Acquires_merge: WBGene00055861
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: toca
    RNASeq_FPKM: WBls:0000004 51.5705 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        51.7901 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        52.0098 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (52)
      WBls:0000027 0.088351 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        1.44346 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        1.83395 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        2.06781 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        2.69216 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        3.11184 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
      WBls:0000038 10.0743 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        1.34193 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        13.5103 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
            RNASeq.remanei.WBls:0000038.control_median
        15.3708 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
      WBls:0000041 31.8792 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        32.2018 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        33.0674 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        33.4238 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        33.45 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        33.7801 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        34.5131 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        35.2582 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
      WBls:0000063 (12)
      WBls:0000101 13.9415 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        18.0771 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (27)
    Paralog: WBGene00060140 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Fes/CIP4, and EFC/F-BAR homology domain; SH3-like domain superfamily; SH3 domain; AH/BAR domain superfamily; and FCH domain. Is an ortholog of C. elegans toca-2. In C. elegans, toca-2 is involved in several processes, including negative regulation of protein localization to adherens junction; positive regulation of egg-laying behavior; and regulation of cellular component organization. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE04651
    Corresponding_transcript: CRE04651.1
    Other_sequence: CRC06437_1
      CR07394
  Experimental_info: Expr_pattern: Expr1102105
    Microarray_results: GPL14146_CRE04651_1206-1265_0.898_19_B
      GPL14146_CRE04651_1368-1427_0.927_4_C
      GPL14146_CRE04651_1828-1887_0.957_1_A
  Method: Gene