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WormBase Tree Display for Gene: WBGene00055119

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Name Class

WBGene00055119SMapS_parentSequenceCrem_Contig7
IdentityVersion4
NameCGC_nameCre-emb-9From_analysisInferred_from_orthology
Sequence_nameCRE25323
Molecular_nameCRE25323
CRE25323.1
RP32189
Other_namecr01.sctg4.wum.467
cr01.sctg4.wum.467.2
Public_nameCre-emb-9
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
203 Jul 2008 11:44:54WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE25323
Other_namecr01.sctg4.wum.467
303 Jul 2008 11:48:44WBPerson4055EventAcquires_mergeWBGene00055120
Name_changeOther_namecr01.sctg4.wum.467.2
404 Jul 2008 11:06:36WBPerson4055Name_changeCGC_nameCre-emb-9
Acquires_mergeWBGene00055120
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classemb
RNASeq_FPKMWBls:000000411.9548From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
13.4927From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
15.0305From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:0000027127.604From_analysisRNASeq.remanei.WBls:0000027.control_mean
140.26From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
146.777From_analysisRNASeq.remanei.WBls:0000027.control_median
153.293From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
154.889From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
61.9756From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:0000038113.864From_analysisRNASeq.remanei.WBls:0000038.control_mean
118.661From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
125.082From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
97.8482From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:000004148.4827From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
54.3166From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
59.3605From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
59.7884From_analysisRNASeq.remanei.WBls:0000041.control_median
60.2163From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
62.5258From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
62.5919From_analysisRNASeq.remanei.WBls:0000041.control_mean
90.6497From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
WBls:0000063 (12)
WBls:000010188.3814From_analysisRNASeq.remanei.total_over_all_stages.control_mean
93.9964From_analysisRNASeq.remanei.total_over_all_stages.control_median
GO_annotation00150504
00150505
Ortholog (28)
Paralog (176)
Structured_descriptionAutomated_descriptionPredicted to be an extracellular matrix structural constituent. Predicted to be part of collagen trimer. Is an ortholog of C. elegans emb-9. In C. elegans, emb-9 is involved in several processes, including positive regulation of axon regeneration; positive regulation of protein secretion; and response to serotonin.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE25323
Corresponding_transcriptCRE25323.1
Other_sequence (169)
Experimental_infoExpr_patternExpr1110325
Microarray_resultsGPL14146_CRE25323_1019-1078_0.620_341_C
GPL14146_CRE25323_4935-4994_0.830_54_B
GPL14146_CRE25323_5359-5418_0.956_2_A
MethodGene