WormBase Tree Display for Gene: WBGene00054184

WBGene00054184 SMap: S_parent: Sequence: Crem_Contig6
  Identity: Version: 3
    Name: CGC_name: Cre-egl-27 From_analysis: Inferred_from_orthology
      Sequence_name: CRE26488
      Molecular_name: CRE26488
        CRE26488.1
        RP46497
      Other_name: cr01.sctg3.wum.203
      Public_name: Cre-egl-27
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:44 WBPerson2970 Name_change: CGC_name: Cre-egl-27
        3 03 Jul 2008 11:44:48 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE26488
                Other_name: cr01.sctg3.wum.203
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: egl
    RNASeq_FPKM: WBls:0000004 88.5813 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        91.3936 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        94.2059 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 17.6296 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        19.9724 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        20.8417 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        21.7109 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        25.7228 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        3.11213 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 5.70532 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        6.26387 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        6.45905 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        6.62724 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 13.1646 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        14.9684 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        17.0538 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        42.021 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        42.6468 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        66.9882 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        67.1545 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        76.5514 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
      WBls:0000063 (12)
      WBls:0000101 14.8575 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        25.7669 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00149503
      00149504
      00149505
    Ortholog (27)
    Paralog: WBGene00058140 Caenorhabditis remanei From_analysis: TreeFam
    Structured_description: Automated_description: Predicted to enable chromatin binding activity and sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans egl-27. In C. elegans, egl-27 is involved in several processes, including egg-laying behavior; hemidesmosome assembly; and nematode male tail tip morphogenesis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE26488
    Corresponding_transcript: CRE26488.1
    Other_sequence: Dviv_isotig29307
      PPC13312_1
      HC06578
      Oden_isotig17203
      JI164933.1
      ACC27472_1
      CR00735
      EX828249.1
      Oden_isotig17204
      CRC00467_1
  Experimental_info: Expr_pattern: Expr1115246
    Microarray_results: GPL14146_CRE26488_1294-1353_0.603_384_B
      GPL14146_CRE26488_1402-1461_0.786_143_A
      GPL14146_CRE26488_1817-1876_0.868_44_C
  Method: Gene