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WormBase Tree Display for Gene: WBGene00054060

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Name Class

WBGene00054060SMapS_parentSequenceCrem_Contig6
IdentityVersion3
NameCGC_nameCre-lgg-1From_analysisInferred_from_orthology
Sequence_nameCRE26291
Molecular_nameCRE26291
CRE26291.1
RP05250
Other_namecr01.sctg3.wum.81
Public_nameCre-lgg-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
229 Nov 2007 17:00:44WBPerson2970Name_changeCGC_nameCre-lgg-1
303 Jul 2008 11:44:47WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE26291
Other_namecr01.sctg3.wum.81
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgg
RNASeq_FPKMWBls:00000041061.4From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
937.877From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
999.638From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
WBls:0000024 (53)
WBls:0000027111.67From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
280.192From_analysisRNASeq.remanei.WBls:0000027.control_mean
316.873From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
325.728From_analysisRNASeq.remanei.WBls:0000027.control_median
334.582From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
357.643From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
WBls:0000038374.857From_analysisRNASeq.remanei.WBls:0000038.control_mean
493.185From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
568.731From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
62.6535From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041425.408From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
505.99From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
531.984From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
617.485From_analysisRNASeq.remanei.WBls:0000041.control_mean
621.958From_analysisRNASeq.remanei.WBls:0000041.control_median
711.933From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
727.436From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
802.161From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
WBls:0000063 (12)
WBls:0000101497.93From_analysisRNASeq.remanei.total_over_all_stages.control_mean
499.587From_analysisRNASeq.remanei.total_over_all_stages.control_median
Ortholog (29)
ParalogWBGene00062492Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Autophagy protein Atg8 ubiquitin like; Autophagy protein Atg8 ubiquitin-like; and Ubiquitin-like domain superfamily. Is an ortholog of C. elegans lgg-1. In C. elegans, lgg-1 is involved in several processes, including defense response to other organism; plasma membrane repair; and positive regulation of autophagosome assembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE26291
Corresponding_transcriptCRE26291.1
Other_sequence (155)
Experimental_infoExpr_patternExpr1102426
Microarray_resultsGPL14146_CRE26291_45-104_0.948_2_A
ReferenceWBPaper00038332
MethodGene