WormBase Tree Display for Gene: WBGene00053325

WBGene00053325 SMap: S_parent: Sequence: Crem_Contig1
  Identity: Version: 3
    Name: CGC_name: Cre-atf-2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE02259
      Molecular_name: CRE02259
        CRE02259.1
        RP26060
      Other_name: cr01.sctg2.wum.118
      Public_name: Cre-atf-2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:44 WBPerson2970 Name_change: CGC_name: Cre-atf-2
        3 03 Jul 2008 11:44:42 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE02259
                Other_name: cr01.sctg2.wum.118
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: atf
    RNASeq_FPKM: WBls:0000004 14.4245 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        14.443 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        14.4615 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (51)
      WBls:0000027 46.5002 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        52.2665 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        56.9389 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        61.6114 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        64.7217 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        7.40131 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 30.0276 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        39.4705 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        45.4692 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        5.14322 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 0.660884 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        0.819691 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        1.24173 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        2.05603 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        2.09543 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        2.94913 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        3.05299 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        3.61175 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
      WBls:0000063 0.630814 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        0.678818 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        0.726821 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        0.777096 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        0.798407 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        0.963715 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        2.11701 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        2.53419 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
      WBls:0000101 12.503 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
        2.3256 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
    GO_annotation: 00148533
      00148534
    Ortholog (31)
    Paralog: WBGene00061191 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00058817 Caenorhabditis remanei From_analysis: TreeFam
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans atf-2. In C. elegans, atf-2 is involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE02259
    Corresponding_transcript: CRE02259.1
    Other_sequence: TSC14388_1
      Dviv_isotig14055
      ES570489.1
      Dviv_isotig14056
      JI168348.1
      CJC10881_1
      JI474868.1
      Tcir_isotig07550
  Experimental_info: Expr_pattern: Expr1098700
    Microarray_results: GPL14146_CRE02259_1136-1195_0.597_160_B
      GPL14146_CRE02259_1189-1248_0.946_4_C
      GPL14146_CRE02259_884-943_0.894_17_A
  Method: Gene