WormBase Tree Display for Gene: WBGene00053186

WBGene00053186 SMap: S_parent: Sequence: Crem_Contig13
  Identity: Version: 8
    Name: CGC_name: Cre-magu-2.2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE05601
      Molecular_name: CRE05601
        CRE05601.1
        RP37958
      Other_name: cr01.sctg1.wum.1046
        Cre-tag-117 From_analysis: Inferred_from_orthology
      Public_name: Cre-magu-2.2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:48 WBPerson2970 Name_change: CGC_name: Cre-tag-117
        3 03 Jul 2008 11:44:41 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE05601
                Other_name: cr01.sctg1.wum.1046
        4 07 Feb 2012 16:36:56 WBPerson2970 Name_change: CGC_name: Cre-magu-2
                Other_name: Cre-tag-117
        5 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        6 08 May 2019 10:09:27 WBPerson1983 Name_change: CGC_name: Cre-magu-2.2
        7 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        8 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cre-magu-2.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: magu
    RNASeq_FPKM: WBls:0000004 5.3686 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        6.16995 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        6.9713 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 0.479325 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        10.6589 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        10.748 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        10.8372 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        14.3528 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        9.08206 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
      WBls:0000038 0.32357 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        10.4005 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
        6.58171 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        9.02105 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
            RNASeq.remanei.WBls:0000038.control_median
      WBls:0000041 2.49851 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        2.59513 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        2.66995 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        2.85086 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        3.01558 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        3.03177 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        3.46984 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        3.82827 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 (12)
      WBls:0000101 3.39137 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        4.58074 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (29)
    Paralog: WBGene00051126 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00062326 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00064910 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00051667 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00056468 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: P-loop containing nucleoside triphosphate hydrolase; SH3-like domain superfamily; SH3 domain; Guanylate kinase/L-type calcium channel beta subunit; Variant SH3 domain; PDZ superfamily; Guanylate kinase; and PDZ domain. Is an ortholog of C. elegans magu-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE05601
    Corresponding_transcript: CRE05601.1
    Other_sequence (30)
  Experimental_info: Expr_pattern: Expr1115661
    Microarray_results: GPL14146_CRE05601_1212-1271_0.907_8_A
      GPL14146_CRE05601_1831-1890_0.884_16_C
      GPL14146_CRE05601_470-529_0.846_48_B
  Remark: [190208 pad] The CGC name Cre-magu-2 was deleted as there was no evidence to support it. This name has correctly been assigned to WBGene00053185 Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cre-magu-2.2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene