WormBase Tree Display for Gene: WBGene00044284
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| WBGene00044284 | SMap | S_parent | Sequence | T25C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | spp-21 | |||||||
| Sequence_name | T25C12.4 | ||||||||
| Molecular_name | T25C12.4 | ||||||||
| T25C12.4.1 | |||||||||
| CE38556 | |||||||||
| Other_name | CELE_T25C12.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | spp-21 | ||||||||
| DB_info | Database | WormFlux | gene | WBGene00044284 | |||||
| NDB | locus_tag | CELE_T25C12.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00044284|UniProtKB=Q52GZ2 | |||||||
| family | PTHR21579 | ||||||||
| NCBI | gene | 3565733 | |||||||
| RefSeq | protein | NM_001029756.1 | |||||||
| TREEFAM | TREEFAM_ID | TF343148 | |||||||
| TrEMBL | UniProtAcc | Q52GZ2 | |||||||
| UniProt_GCRP | UniProtAcc | Q52GZ2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 11 Apr 2005 11:19:43 | WBPerson1983 | Event | Split_from | WBGene00004994 | ||
| Split_from | WBGene00004994 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele | WBVar01499887 | ||||||||
| WBVar01499888 | |||||||||
| WBVar00517539 | |||||||||
| WBVar01499710 | |||||||||
| WBVar01188297 | |||||||||
| WBVar00301487 | |||||||||
| WBVar00246450 | |||||||||
| WBVar01471193 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including daf-16; daf-2; and elt-2 based on tiling array; microarray; and RNA-seq studies. Is affected by thirteen chemicals including Tunicamycin; indole; and D-glucose based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Saposin B type domain and Saposin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T25C12.4 | |||||||
| Corresponding_transcript | T25C12.4.1 | ||||||||
| Other_sequence | CBC09971_1 | ||||||||
| Associated_feature | WBsf236383 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00062696 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00075988 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054116 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019200 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1157662 | ||||||||
| Expr2016077 | |||||||||
| Expr2034313 | |||||||||
| Drives_construct | WBCnstr00023659 | ||||||||
| Construct_product | WBCnstr00023659 | ||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (116) | |||||||||
| Map_info | Map | X | Position | 3.93607 | |||||
| Positive | Positive_clone | T25C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
