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WormBase Tree Display for Gene: WBGene00042642

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Name Class

WBGene00042642SMapS_parentSequencecb25.NA_190
IdentityVersion2
NameCGC_nameCbr-spp-1From_analysisInferred_from_orthology
Sequence_nameCBG24563
Molecular_nameCBG24563
CBG24563.1
CBP13510
Other_nameCBG_24563Accession_evidenceNDBHE601404
Public_nameCbr-spp-1
DB_infoDatabaseNDBlocus_tagCBG_24563
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-spp-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspp
RNASeq_FPKMWBls:0000002156.767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
364.516From_analysisRNASeq.briggsae.WBls:0000002.control_mean
438.939From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
497.841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
246.64From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
335.047From_analysisRNASeq.briggsae.WBls:0000002.control_mean
342.789From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.688357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.831648From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.974938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.554432From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.491896From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.45948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002724.4281From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
38.809From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.02782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
83.9711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
132.919From_analysisRNASeq.briggsae.WBls:0000027.control_mean
415.251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
54.1996From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:0000035482.993From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038101.192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
191.291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
194.918From_analysisRNASeq.briggsae.WBls:0000038.control_median
198.545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
207.163From_analysisRNASeq.briggsae.WBls:0000038.control_mean
337.622From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411093.76From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
434.273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
514.033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
650.577From_analysisRNASeq.briggsae.WBls:0000041.control_median
707.297From_analysisRNASeq.briggsae.WBls:0000041.control_mean
787.121From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1195.37From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1475.19From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
916.625From_analysisRNASeq.briggsae.WBls:0000041.control_mean
940.44From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:0000063179.323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
19.9493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
27.4062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
31.6129From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
54.5597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
62.5702From_analysisRNASeq.briggsae.WBls:0000063.control_mean
105.63From_analysisRNASeq.briggsae.WBls:0000063.control_mean
320.93From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
43.0863From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:0000101156.767From_analysisRNASeq.briggsae.total_over_all_stages.control_median
232.882From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
168.045From_analysisRNASeq.briggsae.total_over_all_stages.control_median
273.932From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (21)
ParalogWBGene00032564Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs an ortholog of C. elegans spp-1. In C. elegans, spp-1 is involved in defense response to other organism and pore formation in membrane of another organism.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG24563
Corresponding_CDS_historyCBG24563:bp194
Corresponding_transcriptCBG24563.1
Other_sequenceCR10745
CBC10698_1
CRC07559_1
Experimental_infoExpr_patternExpr1057657
Microarray_resultsGPL8303_CB6_WBGene00042642_A
GPL8303_CB6_WBGene00042642_B
GPL14143_CBG24563_33-92_0.934_1_A
GPL14143_CBG24563_206-265_0.917_2_B
GPL14143_CBG24563_240-299_0.519_43_C
MethodGene