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WormBase Tree Display for Gene: WBGene00042417

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Name Class

WBGene00042417SMapS_parentSequencecb25.NA_124
IdentityVersion2
NameCGC_nameCbr-rps-3From_analysisInferred_from_orthology
Sequence_nameCBG24262
Molecular_nameCBG24262a
CBG24262a.1
CBP12814
CBG24262b
CBP40516
CBG24262b.1
Other_nameCBG_24262Accession_evidenceNDBHE601461
Public_nameCbr-rps-3
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-rps-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrps
RNASeq_FPKMWBls:00000022719.43From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3251.38From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3331.53From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4023.78From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2795.64From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3023.51From_analysisRNASeq.briggsae.WBls:0000002.control_median
3197.56From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003422.42From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
428.651From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
434.881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
442.24From_analysisRNASeq.briggsae.WBls:0000003.control_mean
469.419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041055.27From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1061.48From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1067.69From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1113.53From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1147.02From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1149.22From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1362.61From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000272413.76From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3135.28From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3260.66From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4232.93From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2864.85From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
3000.06From_analysisRNASeq.briggsae.WBls:0000027.control_median
3161.71From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000353492.83From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000382444.16From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3193.5From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3380.29From_analysisRNASeq.briggsae.WBls:0000038.control_median
3567.09From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3698.08From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5587.57From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000411930.19From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2183.64From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2188.67From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2202.55From_analysisRNASeq.briggsae.WBls:0000041.control_median
2216.43From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2399.28From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1895.96From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1920.89From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2059.43From_analysisRNASeq.briggsae.WBls:0000041.control_median
2091.9From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000632308.32From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2311.31From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2426.5From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2822.51From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2881.42From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
4185.01From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2548.08From_analysisRNASeq.briggsae.WBls:0000063.control_median
2669.67From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2797.04From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001012719.43From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2837.11From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2435.33From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2592.52From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00145522
00145523
00145524
00145525
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of small ribosomal subunit. Is an ortholog of C. elegans rps-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG24262a
CBG24262b
Corresponding_CDS_historyCBG24262:bp194
Corresponding_transcriptCBG24262a.1
CBG24262b.1
Other_sequence (334)
Experimental_infoExpr_patternExpr1068494
Microarray_resultsGPL8303_CB6_WBGene00042417_A
GPL14143_CBG24262_28-87_0.869_15_A
GPL14143_CBG24262_176-235_0.676_60_B
GPL14143_CBG24262_646-705_0.970_1_C
MethodGene