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WormBase Tree Display for Gene: WBGene00041817

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Name Class

WBGene00041817SMapS_parentSequencecb25.fpc4470
IdentityVersion2
NameCGC_nameCbr-sqt-3From_analysisInferred_from_orthology
Sequence_nameCBG23461
Molecular_nameCBG23461
CBG23461.1
CBP05558
Other_nameCBG_23461Accession_evidenceNDBHE601533
Public_nameCbr-sqt-3
DB_infoDatabaseNDBlocus_tagCBG_23461
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-sqt-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqt
RNASeq_FPKMWBls:00000021141.61From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
369.195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
744.819From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
751.875From_analysisRNASeq.briggsae.WBls:0000002.control_mean
309.76From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
557.007From_analysisRNASeq.briggsae.WBls:0000002.control_median
641.346From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003107.057From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
309.26From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
511.463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
342.06From_analysisRNASeq.briggsae.WBls:0000003.control_mean
407.66From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000042141.56From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2172.24From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2202.92From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
2315.13From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
2322.29From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2418.7From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
2533.12From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000272921.73From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3288.03From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3395.08From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3547.28From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2686.42From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3158.41From_analysisRNASeq.briggsae.WBls:0000027.control_median
881.583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351237.85From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381046.06From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1130.16From_analysisRNASeq.briggsae.WBls:0000038.control_median
1397.97From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1585.57From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
338.359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
862.345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:0000041198.655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
21.7287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
25.9438From_analysisRNASeq.briggsae.WBls:0000041.control_median
30.1589From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
64.7187From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.33234From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
38.8848From_analysisRNASeq.briggsae.WBls:0000041.control_median
47.6107From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
62.704From_analysisRNASeq.briggsae.WBls:0000041.control_mean
69.7384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
42.5314From_analysisRNASeq.briggsae.WBls:0000063.control_mean
47.7071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
51.124From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
53.7421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
60.0837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
36.4011From_analysisRNASeq.briggsae.WBls:0000063.control_mean
49.4156From_analysisRNASeq.briggsae.WBls:0000063.control_median
5.74998From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101338.359From_analysisRNASeq.briggsae.total_over_all_stages.control_median
837.883From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
353.777From_analysisRNASeq.briggsae.total_over_all_stages.control_median
875.991From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00145124
Ortholog (26)
Paralog (155)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of cuticle. Is an ortholog of C. elegans sqt-3. In C. elegans, sqt-3 is involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23461
Corresponding_CDS_historyCBG23461:bp194
Corresponding_transcriptCBG23461.1
Other_sequence (113)
Experimental_infoExpr_patternExpr1055188
Microarray_resultsGPL8303_CB6_WBGene00041817_A
GPL8303_CB6_WBGene00041817_B
GPL14143_CBG23461_172-231_0.730_3_B
GPL14143_CBG23461_248-307_0.763_2_C
GPL14143_CBG23461_371-430_0.593_33_A
Expression_clusterWBPaper00059178:Cbr-htz-1(gu167)_downregulated
MethodGene