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WormBase Tree Display for Gene: WBGene00040978

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Name Class

WBGene00040978SMapS_parentSequencecb25.fpc4334b
IdentityVersion2
NameCGC_nameCbr-cfz-2From_analysisInferred_from_orthology
Sequence_nameCBG22418
Molecular_nameCBG22418
CBG22418.1
CBP30278
Other_nameCBG_22418Accession_evidenceNDBHE600946
Public_nameCbr-cfz-2
DB_infoDatabaseNDBlocus_tagCBG_22418
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-cfz-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcfz
RNASeq_FPKMWBls:00000024.06634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.19259From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.29979From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.64044From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.68388From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.64581From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.12947From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000326.4354From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
31.9428From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
37.4501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
25.3829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
29.7561From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000473.8431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
74.2085From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
74.574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
76.3639From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
77.2907From_analysisRNASeq.briggsae.WBls:0000004.control_mean
78.3768From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
83.2957From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.978524From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
11.7356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.52104From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.07839From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.9501From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.15358From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.37915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000357.98849From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.834061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.88709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.32218From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.45642From_analysisRNASeq.briggsae.WBls:0000038.control_median
4.02576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.54181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.99102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.32802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.38643From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.45088From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.57374From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.65294From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.44722From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
1.4631From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.51048From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.78566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.402812From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.421787From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.821848From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.884274From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.513853From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.61233From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.974187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010110.6914From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.02576From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.4931From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.04605From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00144308
00144309
Ortholog (30)
ParalogWBGene00026604Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026848Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027656Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027904Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in cell surface receptor signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans cfz-2. In C. elegans, cfz-2 is involved in neuroblast migration; neuron migration; and positive regulation of motor neuron migration.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22418
Corresponding_CDS_historyCBG22418:bp194
Corresponding_transcriptCBG22418.1
Other_sequenceOden_isotig28506
BMC04916_1
JI167810.1
Oden_isotig29204
Dviv_isotig23698
Experimental_infoExpr_patternExpr1058120
Microarray_resultsGPL8303_CB6_WBGene00040978_A
GPL8303_CB6_WBGene00040978_B
GPL8303_CB6_WBGene00040978_C
GPL8303_CB6_WBGene00040978_D
GPL8303_CB6_WBGene00040978_E
GPL14143_CBG22418_1137-1196_0.670_218_B
GPL14143_CBG22418_1357-1416_0.911_6_A
GPL14143_CBG22418_1522-1581_0.935_2_C
ReferenceWBPaper00031365
WBPaper00032323
MethodGene