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WormBase Tree Display for Gene: WBGene00040836

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Name Class

WBGene00040836SMapS_parentSequencecb25.fpc4321
IdentityVersion2
NameCGC_nameCbr-ptps-1From_analysisInferred_from_orthology
Sequence_nameCBG22232
Molecular_nameCBG22232
CBG22232.1
CBP12053
Other_nameCBG_22232Accession_evidenceNDBHE601428
Public_nameCbr-ptps-1
DB_infoDatabaseNDBlocus_tagCBG_22232
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ptps-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classptps
RNASeq_FPKMWBls:000000213.8562From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
13.8948From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
14.6371From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.1602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
15.0275From_analysisRNASeq.briggsae.WBls:0000002.control_median
23.6342From_analysisRNASeq.briggsae.WBls:0000002.control_mean
50.6256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000313.6869From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
13.7073From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
13.7278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
9.13823From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000416.1142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
19.7626From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
23.411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
22.2029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
23.9189From_analysisRNASeq.briggsae.WBls:0000004.control_mean
28.4194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
29.4469From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:000002711.3834From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.72796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
27.7046From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.71758From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
12.2511From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.8543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
9.28594From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003514.6193From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
15.7713From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
16.3036From_analysisRNASeq.briggsae.WBls:0000038.control_median
16.8359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
34.0991From_analysisRNASeq.briggsae.WBls:0000038.control_mean
88.1802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000414.35397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
4.63432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.94647From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.25861From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
5.83441From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.09074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
6.98507From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.17467From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.20905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
9.36371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006310.5041From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
13.1363From_analysisRNASeq.briggsae.WBls:0000063.control_mean
17.7224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.4022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
9.09854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
9.95425From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
10.2292From_analysisRNASeq.briggsae.WBls:0000063.control_median
11.9303From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.90011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010114.6193From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.7497From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.7368From_analysisRNASeq.briggsae.total_over_all_stages.control_median
18.0201From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (27)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: 6-pyruvoyl tetrahydropterin synthase/QueD family; 6-pyruvoyl tetrahydropterin synthase/QueD superfamily; and 6-pyruvoyl tetrahydropterin synthase. Is an ortholog of C. elegans ptps-1. In C. elegans, ptps-1 is involved in tetrahydrobiopterin biosynthetic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22232
Corresponding_CDS_historyCBG22232:bp194
CBG22232:bp255
Corresponding_transcriptCBG22232.1
Other_sequenceGO252924.1
Tcir_isotig10527
Acan_isotig19976
Name_isotig03595
TDC03284_1
JI222963.1
Dviv_isotig18125
AM743946.1
Dviv_isotig18126
Tcir_isotig19846
Experimental_infoExpr_patternExpr1061984
Microarray_resultsGPL8303_CB6_WBGene00040836_A
GPL14143_CBG22232_13-72_0.908_10_C
GPL14143_CBG22232_172-231_0.951_2_A
GPL14143_CBG22232_199-258_0.954_1_B
MethodGene