WormBase Tree Display for Gene: WBGene00040579

WBGene00040579 SMap: S_parent: Sequence: cb25.fpc4292a
  Identity: Version: 2
    Name: CGC_name: Cbr-tyr-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG21909
      Molecular_name: CBG21909
        CBG21909.1
        CBP29152
      Other_name: CBG_21909 Accession_evidence: NDB HE600952
      Public_name: Cbr-tyr-3
    DB_info: Database: NDB locus_tag CBG_21909
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:10 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-tyr-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tyr
    Allele: WBVar00032752
      WBVar00032757
      WBVar00032762
    RNASeq_FPKM: WBls:0000002 0.397821 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.40839 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.785074 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.134396 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.271393 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.331965 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.079631 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0.145679 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.211726 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.097119 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.084918 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.169836 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.070491 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.085263 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.097355 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 0 From_analysis (12)
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
            RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.009912 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.03965 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
            RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 0.050752 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.056532 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.06883 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.081128 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.1416 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.377989 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.189331 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.195152 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.297533 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        0.306979 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0.071397 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.088391 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.113937 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.174801 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0.235094 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.034508 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.079894 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.100699 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.0976 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.037079 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.099643 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00143988
    Ortholog (23)
    Paralog: WBGene00026773 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00027884 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029564 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033244 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035349 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037728 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable oxidoreductase activity. Is an ortholog of C. elegans tyr-3. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG21909
    Corresponding_CDS_history: CBG21909:bp194
    Corresponding_transcript: CBG21909.1
    Other_sequence (31)
  Experimental_info: Expr_pattern: Expr1069251
    Microarray_results: GPL8303_CB6_WBGene00040579_A
      GPL14143_CBG21909_1405-1464_0.806_4_B
      GPL14143_CBG21909_1627-1686_0.800_9_A
      GPL14143_CBG21909_1844-1903_0.798_10_C
  Method: Gene