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WormBase Tree Display for Gene: WBGene00040442

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Name Class

WBGene00040442SMapS_parentSequencecb25.fpc4260b
IdentityVersion2
NameCGC_nameCbr-acc-2From_analysisInferred_from_orthology
Sequence_nameCBG21746
Molecular_nameCBG21746
CBG21746.1
CBP47848
Other_nameCBG_21746Accession_evidenceNDBHE600966
Public_nameCbr-acc-2
DB_infoDatabaseNDBlocus_tagCBG_21746
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-acc-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classacc
Allele (33)
RNASeq_FPKMWBls:00000020.504823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.85988From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.908304From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.36021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.280444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.682352From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.751339From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.218391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.254809From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.291227From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.309168From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.417885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.926693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.936467From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.946241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
0.82389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.04264From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.22264From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.29373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.090837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.43135From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.13552From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.88436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.15823From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.32292From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.88512From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.42108From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.208723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.763442From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0.802618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.805258From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.807898From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.23453From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.486838From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.635722From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.688357From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.740991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.34795From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.52827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.13463From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.24212From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.86812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.19277From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.11106From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.407808From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.451715From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.855281From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.884426From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.500808From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.577041From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.746274From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.807898From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.03153From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.839585From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.17488From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143853
00143854
00143855
00143856
00143857
00143858
Ortholog (25)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans acc-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21746
Corresponding_CDS_historyCBG21746:bp194
CBG21746:bp257
Corresponding_transcriptCBG21746.1
Other_sequenceBM00123
Tcol_isotig05703
Dviv_isotig28764
GR12504
Tcol_isotig05704
Tcol_isotig05705
PT01916
AI815286.1
Tcol_isotig05702
Experimental_infoExpr_patternExpr1062415
Microarray_resultsGPL8303_CB6_WBGene00040442_A
GPL8303_CB6_WBGene00040442_B
GPL14143_CBG21746_1189-1248_0.846_30_A
MethodGene