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WormBase Tree Display for Gene: WBGene00040133

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Name Class

WBGene00040133SMapS_parentSequencecb25.fpc4228b
IdentityVersion2
NameCGC_nameCbr-prp-19From_analysisInferred_from_orthology
Sequence_nameCBG21324
Molecular_nameCBG21324
CBG21324.1
CBP11780
Other_nameCBG_21324Accession_evidenceNDBHE600993
Public_nameCbr-prp-19
DB_infoDatabaseNDBlocus_tagCBG_21324
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
213 Apr 2012 16:22:54WBPerson2970Name_changeCGC_nameCbr-prp-19
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classprp
RNASeq_FPKMWBls:000000257.7877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
66.1685From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
68.2424From_analysisRNASeq.briggsae.WBls:0000002.control_mean
80.7711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
67.0754From_analysisRNASeq.briggsae.WBls:0000002.control_median
67.9823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
68.1774From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003263.167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
276.293From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
289.42From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
284.087From_analysisRNASeq.briggsae.WBls:0000003.control_mean
299.674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004185.943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
187.393From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
188.844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
155.696From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
176.333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
179.182From_analysisRNASeq.briggsae.WBls:0000004.control_mean
189.092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002714.4519From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
23.8856From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.2724From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
52.9324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
29.788From_analysisRNASeq.briggsae.WBls:0000027.control_mean
30.9737From_analysisRNASeq.briggsae.WBls:0000027.control_median
47.4955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003557.8776From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003834.6235From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
50.6471From_analysisRNASeq.briggsae.WBls:0000038.control_mean
51.7011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
54.1572From_analysisRNASeq.briggsae.WBls:0000038.control_median
56.6134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
59.6503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041111.177From_analysisRNASeq.briggsae.WBls:0000041.control_mean
117.463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
118.546From_analysisRNASeq.briggsae.WBls:0000041.control_median
119.628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
129.179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
78.4373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
100.688From_analysisRNASeq.briggsae.WBls:0000041.control_median
101.514From_analysisRNASeq.briggsae.WBls:0000041.control_mean
80.4619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
83.9134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006357.7479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
60.4791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
62.7118From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
68.5742From_analysisRNASeq.briggsae.WBls:0000063.control_mean
70.3918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
91.5406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
66.5518From_analysisRNASeq.briggsae.WBls:0000063.control_median
71.852From_analysisRNASeq.briggsae.WBls:0000063.control_mean
88.2409From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010162.7118From_analysisRNASeq.briggsae.total_over_all_stages.control_median
86.9889From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
71.2145From_analysisRNASeq.briggsae.total_over_all_stages.control_median
97.6728From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143644
00143645
00143646
00143647
00143648
00143649
Ortholog (28)
ParalogWBGene00040951Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ubiquitin protein ligase activity. Predicted to be involved in DNA repair; mRNA splicing, via spliceosome; and protein ubiquitination. Predicted to be part of Prp19 complex. Is an ortholog of C. elegans prp-19. In C. elegans, prp-19 is involved in nuclear mRNA surveillance.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21324
Corresponding_CDS_historyCBG21324:bp194
Corresponding_transcriptCBG21324.1
Other_sequence (82)
Experimental_infoExpr_patternExpr1059133
Microarray_resultsGPL8303_CB6_WBGene00040133_A
GPL8303_CB6_WBGene00040133_B
GPL14143_CBG21324_757-816_0.861_26_C
GPL14143_CBG21324_1170-1229_0.950_1_B
GPL14143_CBG21324_1322-1381_0.879_19_A
MethodGene