WormBase Tree Display for Gene: WBGene00040020

WBGene00040020 SMap: S_parent: Sequence: cb25.fpc4224b
  Identity: Version: 2
    Name: CGC_name: Cbr-cnd-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG21175
      Molecular_name: CBG21175
        CBG21175.1
        CBP05040
      Other_name: CBG_21175 Accession_evidence: NDB HE600921
      Public_name: Cbr-cnd-1
    DB_info: Database: NDB locus_tag CBG_21175
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-cnd-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cnd
    RNASeq_FPKM: WBls:0000002 1.2028 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        1.84475 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        1.86458 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        2.54619 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        1.37448 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        1.60961 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        1.74206 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 21.6185 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        27.2239 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        32.8293 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        27.1056 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        27.1845 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 58.8269 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        60.3065 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        61.7862 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        58.862 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        62.5294 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        62.9004 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        72.4976 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 0.29842 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        0.363203 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        0.427985 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0.632327 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        0.964081 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        3.12992 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
        0.554699 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
      WBls:0000027 0.359009 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        12.7261 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.12255 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        5.06922 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        0.667882 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        1.39522 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        3.96888 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 1.05668 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.117021 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0.156029 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.322657 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.430269 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.489284 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.958741 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 0.540229 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.608106 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.616817 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.625529 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.648188 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.81889 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.376528 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        0.607197 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.673897 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0.42853 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.582699 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.786506 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.02569 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.21636 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.11438 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0.606079 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.696293 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.955759 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.81889 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        7.24888 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.888816 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        11.445 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00143517
    Ortholog (37)
    Paralog: WBGene00033323 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034401 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034567 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034690 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable protein dimerization activity. Is an ortholog of C. elegans cnd-1. In C. elegans, cnd-1 is involved in axonal fasciculation and negative regulation of gliogenesis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG21175
    Corresponding_CDS_history: CBG21175:bp194
    Corresponding_transcript: CBG21175.1
    Other_sequence (13)
  Experimental_info: Expr_pattern: Expr1063226
    Microarray_results: GPL8303_CB6_WBGene00040020_A
      GPL8303_CB6_WBGene00040020_B
      GPL14143_CBG21175_8-67_0.868_19_C
      GPL14143_CBG21175_217-276_0.923_6_B
      GPL14143_CBG21175_514-573_0.820_31_A
  Method: Gene