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WormBase Tree Display for Gene: WBGene00039805

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Name Class

WBGene00039805SMapS_parentSequencecb25.fpc4206c
IdentityVersion2
NameCGC_nameCbr-xrn-2From_analysisInferred_from_orthology
Sequence_nameCBG20900
Molecular_nameCBG20900
CBG20900.1
CBP30614
Other_nameCBG_20900Accession_evidenceNDBHE600928
Public_nameCbr-xrn-2
DB_infoDatabaseNDBlocus_tagCBG_20900
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-xrn-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxrn
AlleleWBVar00129144
RNASeq_FPKMWBls:000000212.1456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
30.7838From_analysisRNASeq.briggsae.WBls:0000002.control_mean
37.1749From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
43.031From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
30.9531From_analysisRNASeq.briggsae.WBls:0000002.control_mean
31.4611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
34.318From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:0000003109.263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
81.7From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
95.4815From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
100.454From_analysisRNASeq.briggsae.WBls:0000003.control_mean
110.398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000443.8886From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
45.13From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
46.3713From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
45.012From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
45.6771From_analysisRNASeq.briggsae.WBls:0000004.control_mean
45.9789From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
47.1348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.8729From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
14.0004From_analysisRNASeq.briggsae.WBls:0000027.control_mean
25.6272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.50104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
16.1885From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.3129From_analysisRNASeq.briggsae.WBls:0000027.control_median
22.7528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003533.6124From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.8138From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
25.3466From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
26.1833From_analysisRNASeq.briggsae.WBls:0000038.control_mean
28.6866From_analysisRNASeq.briggsae.WBls:0000038.control_median
32.0267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
34.5459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004128.7376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
46.4871From_analysisRNASeq.briggsae.WBls:0000041.control_mean
51.9375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
52.1819From_analysisRNASeq.briggsae.WBls:0000041.control_median
52.4264From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
52.8468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
25.8479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
32.0084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
40.6341From_analysisRNASeq.briggsae.WBls:0000041.control_mean
41.9729From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006337.3754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
37.7428From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
41.2293From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
43.9929From_analysisRNASeq.briggsae.WBls:0000063.control_mean
44.5485From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
59.0687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
41.8517From_analysisRNASeq.briggsae.WBls:0000063.control_median
42.474From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
43.7398From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010136.5947From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
37.1749From_analysisRNASeq.briggsae.total_over_all_stages.control_median
37.2752From_analysisRNASeq.briggsae.total_over_all_stages.control_median
38.5345From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143259
00143260
00143261
00143262
00143263
Ortholog (34)
ParalogWBGene00039750Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable 5'-3' RNA exonuclease activity and nucleic acid binding activity. Predicted to be involved in nucleobase-containing compound metabolic process. Predicted to be located in nucleus. Is an ortholog of C. elegans xrn-2. In C. elegans, xrn-2 is involved in several processes, including miRNA catabolic process; negative regulation of miRNA-mediated gene silencing; and regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20900
Corresponding_CDS_historyCBG20900:bp194
Corresponding_transcriptCBG20900.1
Other_sequence (40)
Experimental_infoExpr_patternExpr1055308
Microarray_resultsGPL8303_CB6_WBGene00039805_A
GPL8303_CB6_WBGene00039805_B
GPL14143_CBG20900_341-400_0.802_6_B
GPL14143_CBG20900_948-1007_0.801_7_C
GPL14143_CBG20900_1130-1189_0.802_5_A
MethodGene