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WormBase Tree Display for Gene: WBGene00039500

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Name Class

WBGene00039500SMapS_parentSequencecb25.fpc4194
IdentityVersion2
NameCGC_nameCbr-tsp-13From_analysisInferred_from_orthology
Sequence_nameCBG20537
Molecular_nameCBG20537
CBG20537.1
CBP43843
Other_nameCBG_20537Accession_evidenceNDBHE601134
Public_nameCbr-tsp-13
DB_infoDatabaseNDBlocus_tagCBG_20537
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tsp-13
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtsp
AlleleWBVar00128755
WBVar00128756
WBVar00128751
WBVar00128757
WBVar00128752
WBVar00128753
WBVar00128754
RNASeq_FPKMWBls:00000021.43616From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.51917From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.82395From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.51652From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.08908From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.47766From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.39023From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000031.87854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
2.33466From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.79077From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.654609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.77464From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000412.4797From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
12.9465From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
13.4132From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
11.1421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
11.4931From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
12.7401From_analysisRNASeq.briggsae.WBls:0000004.control_mean
15.1726From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.436303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.03338From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.53893From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.1471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
12.013From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
2.09024From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.15745From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000359.53253From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.555649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.50817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.38242From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.89647From_analysisRNASeq.briggsae.WBls:0000038.control_median
8.28477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
9.18111From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000410.590723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.723296From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.781343From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.83939From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.66346From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.50041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.35384From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.86421From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.8683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
6.66316From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.175192From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.364713From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.576434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.07194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.375813From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.650396From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.07881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.87854From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.64575From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.85999From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.47109From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142982
Ortholog (30)
Paralog (17)
Structured_descriptionAutomated_descriptionPredicted to be located in membrane. Is an ortholog of C. elegans tsp-13.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20537
Corresponding_CDS_historyCBG20537:bp194
CBG20537:bp255
Corresponding_transcriptCBG20537.1
Other_sequence (39)
Experimental_infoExpr_patternExpr1067453
Microarray_resultsGPL8303_CB6_WBGene00039500_A
GPL8303_CB6_WBGene00039500_C
GPL8303_CB6_WBGene00039500_D
GPL8303_CB6_WBGene00039500_E
GPL14143_CBG20537_180-239_0.886_7_C
GPL14143_CBG20537_312-371_0.863_17_B
GPL14143_CBG20537_444-503_0.862_18_A
MethodGene