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WormBase Tree Display for Gene: WBGene00039140

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Name Class

WBGene00039140SMapS_parentSequencecb25.fpc4152
IdentityVersion2
NameCGC_nameCbr-spp-18From_analysisInferred_from_orthology
Sequence_nameCBG20048
Molecular_nameCBG20048
CBG20048.1
CBP26208
Other_nameCBG_20048Accession_evidenceNDBHE601481
Public_nameCbr-spp-18
DB_infoDatabaseNDBlocus_tagCBG_20048
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-spp-18
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspp
RNASeq_FPKMWBls:0000002252.946From_analysisRNASeq.briggsae.WBls:0000002.control_mean
285.39From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
373.756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
99.6933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
329.573From_analysisRNASeq.briggsae.WBls:0000002.control_median
357.422From_analysisRNASeq.briggsae.WBls:0000002.control_mean
670.848From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000031.20185From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
2.40369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.80123From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000042.32783From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.36541From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.40299From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
2.65691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.37577From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.62547From_analysisRNASeq.briggsae.WBls:0000004.control_mean
5.36384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027105.086From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
143.274From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.9047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
297.83From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
125.281From_analysisRNASeq.briggsae.WBls:0000027.control_mean
71.3024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
88.1942From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003591.1048From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038104.193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
230.281From_analysisRNASeq.briggsae.WBls:0000038.control_median
256.576From_analysisRNASeq.briggsae.WBls:0000038.control_mean
356.369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
466.763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
98.9787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041119.362From_analysisRNASeq.briggsae.WBls:0000041.control_mean
300.39From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
54.1177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
57.7532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
61.4692From_analysisRNASeq.briggsae.WBls:0000041.control_median
65.1852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
163.571From_analysisRNASeq.briggsae.WBls:0000041.control_median
176.445From_analysisRNASeq.briggsae.WBls:0000041.control_mean
261.957From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
319.27From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063167.087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
169.327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
186.112From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
235.677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
269.657From_analysisRNASeq.briggsae.WBls:0000063.control_mean
590.084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
177.719From_analysisRNASeq.briggsae.WBls:0000063.control_median
231.903From_analysisRNASeq.briggsae.WBls:0000063.control_mean
43.1309From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101105.086From_analysisRNASeq.briggsae.total_over_all_stages.control_median
172.342From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
101.943From_analysisRNASeq.briggsae.total_over_all_stages.control_median
167.785From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (22)
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domain: Saposin B type domain. Is an ortholog of C. elegans spp-18. In C. elegans, spp-18 is involved in innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20048
Corresponding_CDS_historyCBG20048:bp194
Corresponding_transcriptCBG20048.1
Other_sequenceCSC00706_1
FD517186.1
CBC01973_1
FD514900.1
FD516627.1
Oden_isotig24770
CBC01973_2
CJC02180_1
Experimental_infoExpr_patternExpr1061960
Microarray_resultsGPL8303_CB6_WBGene00039140_A
GPL14143_CBG20048_63-122_0.829_21_A
GPL14143_CBG20048_193-252_0.945_3_B
GPL14143_CBG20048_323-382_0.972_1_C
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene