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WormBase Tree Display for Gene: WBGene00039121

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Name Class

WBGene00039121SMapS_parentSequencecb25.fpc4152
IdentityVersion1
NameSequence_nameCBG20017
Molecular_nameCBG20017
CBG20017.1
CBP11335
Other_nameCBG_20017Accession_evidenceNDBHE601481
Public_nameCBG20017
DB_infoDatabaseNDBlocus_tagCBG_20017
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
Allele (20)
RNASeq_FPKMWBls:000000211.4558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
13.7625From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
22.1286From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.1676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
16.5363From_analysisRNASeq.briggsae.WBls:0000002.control_median
19.3101From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
21.424From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.188055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.330243From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.47243From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.522496From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.907002From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.349675From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.69935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.159486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.551745From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.858009From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.04188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002723.7681From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.09544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
60.4099From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.79904From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
11.398From_analysisRNASeq.briggsae.WBls:0000027.control_median
14.997From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
21.5753From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000353.71135From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.4213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
130.069From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
18.8729From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
24.9216From_analysisRNASeq.briggsae.WBls:0000038.control_median
30.9702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
47.8334From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:000004113.6899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
18.8643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
20.7581From_analysisRNASeq.briggsae.WBls:0000041.control_mean
21.9653From_analysisRNASeq.briggsae.WBls:0000041.control_median
25.0664From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
25.4118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
25.2391From_analysisRNASeq.briggsae.WBls:0000041.control_median
29.4747From_analysisRNASeq.briggsae.WBls:0000041.control_mean
37.4723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
56.3435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:0000063145.436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
38.8981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
41.3319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
48.9046From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
54.6918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
65.8525From_analysisRNASeq.briggsae.WBls:0000063.control_mean
11.6995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
45.1183From_analysisRNASeq.briggsae.WBls:0000063.control_median
56.827From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010113.7625From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.2084From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.7262From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.5219From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (18)
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is an ortholog of C. elegans C33A12.19.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20017
Corresponding_CDS_historyCBG20017:bp194
CBG20017:bp255
Corresponding_transcriptCBG20017.1
Other_sequenceCJC02590_1
CRC09599_1
CBC04655_1
JI244156.1
CR08591
JI224945.1
Experimental_infoExpr_patternExpr1059836
Microarray_resultsGPL8303_CB6_WBGene00039121_A
GPL8303_CB6_WBGene00039121_B
GPL14143_CBG20017_35-94_0.923_6_C
GPL14143_CBG20017_147-206_0.935_3_B
GPL14143_CBG20017_193-252_0.946_1_A
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
WBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene