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WormBase Tree Display for Gene: WBGene00039106

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Name Class

WBGene00039106SMapS_parentSequencecb25.fpc4152
IdentityVersion1
NameSequence_nameCBG20000
Molecular_nameCBG20000
CBG20000.1
CBP04673
Other_nameCBG_20000Accession_evidenceNDBHE601481
Public_nameCBG20000
DB_infoDatabaseNDBlocus_tagCBG_20000
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00028227
RNASeq_FPKMWBls:000000217.9004From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
20.6076From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
23.1884From_analysisRNASeq.briggsae.WBls:0000002.control_mean
31.0572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
21.9165From_analysisRNASeq.briggsae.WBls:0000002.control_median
23.1977From_analysisRNASeq.briggsae.WBls:0000002.control_mean
23.2255From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000314.5509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
14.8383From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
15.1256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
11.0358From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
13.5708From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000419.6884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
19.7798From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
19.8711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
15.3295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
20.9651From_analysisRNASeq.briggsae.WBls:0000004.control_mean
22.1504From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
27.7863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.0473From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.8042From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.8214From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
19.5162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
12.7145From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.7601From_analysisRNASeq.briggsae.WBls:0000027.control_median
17.7161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003518.7595From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.0397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
23.2702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
29.2561From_analysisRNASeq.briggsae.WBls:0000038.control_median
32.9239From_analysisRNASeq.briggsae.WBls:0000038.control_mean
35.2421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
58.1436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004129.0646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
31.2078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
31.903From_analysisRNASeq.briggsae.WBls:0000041.control_mean
31.9942From_analysisRNASeq.briggsae.WBls:0000041.control_median
32.7806From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
34.5588From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
33.6697From_analysisRNASeq.briggsae.WBls:0000041.control_median
34.4494From_analysisRNASeq.briggsae.WBls:0000041.control_mean
36.5077From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
42.5771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006318.1088From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
21.3187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
21.802From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
23.1934From_analysisRNASeq.briggsae.WBls:0000063.control_mean
24.041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
30.6964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
21.6976From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
21.7498From_analysisRNASeq.briggsae.WBls:0000063.control_median
22.9441From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010121.3187From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.8034From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
21.7139From_analysisRNASeq.briggsae.total_over_all_stages.control_median
23.1401From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142590
00142591
Ortholog (28)
Structured_descriptionAutomated_descriptionPredicted to be involved in mitochondrial translation. Predicted to be located in mitochondrial ribosome. Is an ortholog of C. elegans C24D10.6.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20000
Corresponding_CDS_historyCBG20000:bp194
Corresponding_transcriptCBG20000.1
Other_sequence (44)
Experimental_infoExpr_patternExpr1057444
Microarray_resultsGPL8303_CB6_WBGene00039106_A
GPL8303_CB6_WBGene00039106_B
GPL14143_CBG20000_190-249_0.817_33_A
GPL14143_CBG20000_304-363_0.948_3_B
GPL14143_CBG20000_413-472_0.861_20_C
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene