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WormBase Tree Display for Gene: WBGene00038880

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Name Class

WBGene00038880SMapS_parentSequencecb25.fpc4140
IdentityVersion2
NameCGC_nameCbr-smp-1From_analysisInferred_from_orthology
Sequence_nameCBG19706
Molecular_nameCBG19706a
CBG19706a.1
CBP25220
CBG19706b
CBP40469
CBG19706b.1
Other_nameCBG_19706Accession_evidenceNDBHE601474
Public_nameCbr-smp-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-smp-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmp
Allele (29)
RNASeq_FPKMWBls:000000210.9819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
17.5437From_analysisRNASeq.briggsae.WBls:0000002.control_mean
19.79From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
21.8591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
16.5374From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
17.2921From_analysisRNASeq.briggsae.WBls:0000002.control_mean
18.1637From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000311.3389From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
13.8311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
8.84666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
11.86From_analysisRNASeq.briggsae.WBls:0000003.control_mean
12.9021From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000433.1672From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
34.2452From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
35.3232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
29.0793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
33.6038From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
34.153From_analysisRNASeq.briggsae.WBls:0000004.control_mean
39.5914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002719.1722From_analysisRNASeq.briggsae.WBls:0000027.control_mean
20.0395From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
30.901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.57613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
22.561From_analysisRNASeq.briggsae.WBls:0000027.control_mean
25.4702From_analysisRNASeq.briggsae.WBls:0000027.control_median
32.7272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003528.699From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003817.3011From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.4323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
19.7454From_analysisRNASeq.briggsae.WBls:0000038.control_median
22.0585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
22.8348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.87882From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.4525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
12.9648From_analysisRNASeq.briggsae.WBls:0000041.control_mean
13.67From_analysisRNASeq.briggsae.WBls:0000041.control_median
14.8876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
14.9849From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
9.53398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
11.219From_analysisRNASeq.briggsae.WBls:0000041.control_median
11.4166From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.65542From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
9.98545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006310.101From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
11.1086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
11.7429From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
12.3113From_analysisRNASeq.briggsae.WBls:0000063.control_mean
13.8139From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
14.7899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
11.4856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
11.6143From_analysisRNASeq.briggsae.WBls:0000063.control_median
12.1736From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010114.9849From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.1571From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
15.7612From_analysisRNASeq.briggsae.total_over_all_stages.control_median
18.1612From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142371
Ortholog (31)
ParalogWBGene00033042Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040760Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041818Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable semaphorin receptor binding activity. Is an ortholog of C. elegans smp-1. In C. elegans, smp-1 is involved in nematode male tail mating organ morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19706a
CBG19706b
Corresponding_CDS_historyCBG19706:bp194
Corresponding_transcriptCBG19706a.1
CBG19706b.1
Other_sequence (27)
Experimental_infoExpr_patternExpr1069383
Microarray_resultsGPL8303_CB6_WBGene00038880_A
GPL8303_CB6_WBGene00038880_B
GPL14143_CBG19706_1318-1377_0.890_8_C
GPL14143_CBG19706_1500-1559_0.808_30_B
GPL14143_CBG19706_2079-2138_0.959_1_A
MethodGene