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WormBase Tree Display for Gene: WBGene00038279

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Name Class

WBGene00038279SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-pmp-5From_analysisInferred_from_orthology
Sequence_nameCBG18988
Molecular_nameCBG18988a
CBG18988a.1
CBP27383
CBG18988b
CBP43422
CBG18988b.1
Other_nameCBG_18988Accession_evidenceNDBHE601047
Public_nameCbr-pmp-5
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pmp-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpmp
RNASeq_FPKMWBls:0000002110.973From_analysisRNASeq.briggsae.WBls:0000002.control_mean
239.614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
33.5615From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
59.7419From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
15.1847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
46.6517From_analysisRNASeq.briggsae.WBls:0000002.control_median
87.0255From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000032.70868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
3.42631From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
4.14393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.99015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
2.94759From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000046.11121From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
6.36558From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
6.61996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
6.4092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
6.53505From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
6.54908From_analysisRNASeq.briggsae.WBls:0000004.control_mean
7.06997From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.236096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.51651From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.0118From_analysisRNASeq.briggsae.WBls:0000027.control_mean
46.2828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
23.8997From_analysisRNASeq.briggsae.WBls:0000027.control_median
24.7711From_analysisRNASeq.briggsae.WBls:0000027.control_mean
51.049From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000356.1681From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038118.258From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
14.7226From_analysisRNASeq.briggsae.WBls:0000038.control_median
19.5242From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.75387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
37.6143From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.92104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004117.9641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
38.0047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
56.6264From_analysisRNASeq.briggsae.WBls:0000041.control_mean
57.4765From_analysisRNASeq.briggsae.WBls:0000041.control_median
76.9483From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
93.5886From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
15.1553From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
46.7398From_analysisRNASeq.briggsae.WBls:0000041.control_median
49.5227From_analysisRNASeq.briggsae.WBls:0000041.control_mean
55.4749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
23.747From_analysisRNASeq.briggsae.WBls:0000063.control_mean
26.0385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
29.4223From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
29.8245From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
33.4499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
14.7125From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
22.2413From_analysisRNASeq.briggsae.WBls:0000063.control_mean
27.7304From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010117.9641From_analysisRNASeq.briggsae.total_over_all_stages.control_median
34.2838From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
14.9339From_analysisRNASeq.briggsae.total_over_all_stages.control_median
30.7318From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141735
00141736
00141737
00141738
00141739
Ortholog (46)
ParalogWBGene00023782Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027211Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032339Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032340Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans pmp-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18988a
CBG18988b
Corresponding_CDS_historyCBG18988:bp194
Corresponding_transcriptCBG18988a.1
CBG18988b.1
Other_sequence (31)
Experimental_infoExpr_patternExpr1059507
Microarray_resultsGPL8303_CB6_WBGene00038279_A
GPL8303_CB6_WBGene00038279_B
GPL14143_CBG18988_604-663_0.869_42_C
GPL14143_CBG18988_685-744_0.848_68_B
GPL14143_CBG18988_862-921_0.859_54_A
MethodGene