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WormBase Tree Display for Gene: WBGene00038066

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Name Class

WBGene00038066SMapS_parentSequencecb25.fpc4112
IdentityVersion2
NameCGC_nameCbr-hda-3From_analysisInferred_from_orthology
Sequence_nameCBG18689
Molecular_nameCBG18689
CBG18689.1
CBP31225
Other_nameCBG_18689Accession_evidenceNDBHE601037
Public_nameCbr-hda-3
DB_infoDatabaseNDBlocus_tagCBG_18689
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-hda-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhda
RNASeq_FPKMWBls:000000215.5264From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
18.6806From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
19.5277From_analysisRNASeq.briggsae.WBls:0000002.control_mean
24.3761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
21.5284From_analysisRNASeq.briggsae.WBls:0000002.control_median
23.0494From_analysisRNASeq.briggsae.WBls:0000002.control_mean
33.6143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003101.873From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
115.422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
88.3239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
100.747From_analysisRNASeq.briggsae.WBls:0000003.control_mean
98.4953From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000469.477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
70.8093From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
72.1416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
66.2719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
69.095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
69.5424From_analysisRNASeq.briggsae.WBls:0000004.control_mean
70.7265From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002710.5217From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.12612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.77886From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.14223From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.30247From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.56319From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.82608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.27658From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.3999From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
12.3178From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.67271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
8.87602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
9.06661From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.63796From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:000004120.6888From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
39.4027From_analysisRNASeq.briggsae.WBls:0000041.control_mean
45.1255From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
45.2928From_analysisRNASeq.briggsae.WBls:0000041.control_median
45.46From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
46.3364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
26.9288From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
28.2106From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
35.4584From_analysisRNASeq.briggsae.WBls:0000041.control_mean
36.668From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006319.7776From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
20.4662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
22.0144From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
22.7571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
23.9913From_analysisRNASeq.briggsae.WBls:0000063.control_mean
34.9412From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
22.3857From_analysisRNASeq.briggsae.WBls:0000063.control_median
24.5299From_analysisRNASeq.briggsae.WBls:0000063.control_mean
27.2229From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010119.0694From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.547From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
21.3516From_analysisRNASeq.briggsae.total_over_all_stages.control_median
32.2698From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141566
Contained_in_operonCBOPA1000
Ortholog (26)
ParalogWBGene00026050Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027230Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030730Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031188Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034131Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035693Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036299Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039076Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039615Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00303239Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable histone deacetylase activity. Is an ortholog of C. elegans hda-3. In C. elegans, hda-3 is involved in DNA protection.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18689
Corresponding_CDS_historyCBG18689:bp194
Corresponding_transcriptCBG18689.1
Other_sequence (43)
Experimental_infoExpr_patternExpr1062456
Microarray_resultsGPL8303_CB6_WBGene00038066_A
GPL8303_CB6_WBGene00038066_B
GPL14143_CBG18689_717-776_0.752_141_C
GPL14143_CBG18689_1026-1085_0.943_7_B
GPL14143_CBG18689_1149-1208_0.941_8_A
MethodGene