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WormBase Tree Display for Gene: WBGene00037712

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Name Class

WBGene00037712SMapS_parentSequencecb25.fpc4079b
IdentityVersion2
NameCGC_nameCbr-mdt-29From_analysisInferred_from_orthology
Sequence_nameCBG18261
Molecular_nameCBG18261
CBG18261.1
CBP40730
Other_nameCBG_18261Accession_evidenceNDBHE600936
Public_nameCbr-mdt-29
DB_infoDatabaseNDBlocus_tagCBG_18261
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-mdt-29
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmdt
RNASeq_FPKMWBls:000000223.5833From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
24.7918From_analysisRNASeq.briggsae.WBls:0000002.control_mean
42.14From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
8.65198From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
26.3428From_analysisRNASeq.briggsae.WBls:0000002.control_mean
27.2897From_analysisRNASeq.briggsae.WBls:0000002.control_median
30.9961From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000359.7308From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
76.593From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
93.4553From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
59.3855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
70.8572From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000439.9331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
40.7802From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
41.6272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
35.1106From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
40.1341From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
40.5081From_analysisRNASeq.briggsae.WBls:0000004.control_mean
45.7353From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.4015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.3603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
5.21978From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
6.99386From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.0075From_analysisRNASeq.briggsae.WBls:0000027.control_mean
23.0485From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
9.31064From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003524.1743From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003818.247From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.3075From_analysisRNASeq.briggsae.WBls:0000038.control_mean
28.2182From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
29.1899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.546From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
8.27591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004116.8588From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
31.3814From_analysisRNASeq.briggsae.WBls:0000041.control_mean
34.3401From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
35.2557From_analysisRNASeq.briggsae.WBls:0000041.control_median
36.1714From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
38.1552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
15.701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
19.8042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
26.8384From_analysisRNASeq.briggsae.WBls:0000041.control_mean
27.0721From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006313.433From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
14.123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
16.0625From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
17.4654From_analysisRNASeq.briggsae.WBls:0000063.control_mean
18.4898From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
25.2185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
17.2761From_analysisRNASeq.briggsae.WBls:0000063.control_median
18.145From_analysisRNASeq.briggsae.WBls:0000063.control_mean
21.543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010118.4898From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.5499From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
23.3159From_analysisRNASeq.briggsae.total_over_all_stages.control_median
26.4054From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141205
Ortholog (23)
Structured_descriptionAutomated_descriptionPredicted to be part of mediator complex. Is an ortholog of C. elegans mdt-29. In C. elegans, mdt-29 is involved in lateral inhibition; positive regulation of Notch signaling pathway; and regulation of cell fate specification.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18261
Corresponding_CDS_historyCBG18261:bp194
CBG18261:bp207
CBG18261:bp255
Corresponding_transcriptCBG18261.1
Other_sequenceCBC17057_1
JI179616.1
Experimental_infoExpr_patternExpr1061545
Microarray_resultsGPL8303_CB6_WBGene00037712_A
GPL8303_CB6_WBGene00037712_B
GPL14143_CBG18261_1004-1063_0.795_55_B
GPL14143_CBG18261_1108-1167_0.914_6_A
GPL14143_CBG18261_1215-1274_0.938_3_C
MethodGene