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WormBase Tree Display for Gene: WBGene00037280

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Name Class

WBGene00037280SMapS_parentSequencecb25.fpc4069d
IdentityVersion2
NameCGC_nameCbr-col-115From_analysisInferred_from_orthology
Sequence_nameCBG17725
Molecular_nameCBG17725
CBG17725.1
CBP33943
Other_nameCBG_17725Accession_evidenceNDBHE600976
Public_nameCbr-col-115
DB_infoDatabaseNDBlocus_tagCBG_17725
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-col-115
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
RNASeq_FPKMWBls:000000222.9693From_analysisRNASeq.briggsae.WBls:0000002.control_mean
28.3776From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
32.43From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
8.10034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
18.239From_analysisRNASeq.briggsae.WBls:0000002.control_median
19.185From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.83202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.587811From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.28099From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.97416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
4.58734From_analysisRNASeq.briggsae.WBls:0000003.control_mean
7.20006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.28356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.51248From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.7414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
3.64295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
4.06048From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.78683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
4.84764From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027128.333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
29.4319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
57.6905From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
71.8185From_analysisRNASeq.briggsae.WBls:0000027.control_mean
132.982From_analysisRNASeq.briggsae.WBls:0000027.control_mean
316.471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
93.0117From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:00000351.67068From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.7794From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
27.784From_analysisRNASeq.briggsae.WBls:0000038.control_median
38.3925From_analysisRNASeq.briggsae.WBls:0000038.control_mean
39.7886From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.71373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
89.2881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.764371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.879212From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.10786From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.9527From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.3365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.83073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.33111From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.2344From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.71327From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.13768From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000633.2234From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.23214From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
4.3344From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.61222From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.26623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
7.00492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.573696From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
3.78327From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.93913From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010117.2946From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.69463From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.4044From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.74073From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (29)
Paralog (155)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Collagen triple helix repeat and Collagen triple helix repeat (20 copies). Is an ortholog of C. elegans col-115.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG17725
Corresponding_CDS_historyCBG17725:bp194
Corresponding_transcriptCBG17725.1
Other_sequenceFG980332.1
HCC01226_1
OOC01204_1
CR10527
HC00440
JI462031.1
CRC06954_1
Experimental_infoExpr_patternExpr1062207
Microarray_resultsGPL8303_CB6_WBGene00037280_A
GPL8303_CB6_WBGene00037280_B
GPL14143_CBG17725_689-748_0.938_3_C
GPL14143_CBG17725_987-1046_0.952_1_B
GPL14143_CBG17725_1177-1236_0.942_2_A
MethodGene