Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00036977

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00036977SMapS_parentSequencecb25.fpc4069a
IdentityVersion2
NameCGC_nameCbr-sdc-2From_analysisInferred_from_orthology
Sequence_nameCBG17307
Molecular_nameCBG17307
CBG17307.1
CBP44325
Other_nameCBG_17307Accession_evidenceNDBHE600924
Public_nameCbr-sdc-2
DB_infoDatabaseNDBlocus_tagCBG_17307
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:06WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sdc-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsdc
Allele (30)
RNASeq_FPKMWBls:00000022.00889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.15096From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.18904From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.40728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.68116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.06207From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.07993From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000312.9857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
13.3092From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
13.6327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
11.5307From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
12.7164From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000048.54047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
8.72462From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
8.90878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
13.5156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
8.00345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
9.0621From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
9.60608From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.794136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.71061From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.37167From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.61027From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.41386From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.1171From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.30803From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000355.84108From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.31969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.03From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.69798From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.94274From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.36597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
5.05531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000411.7968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.14565From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.15671From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.16778From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.23579From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.83291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.90881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.25847From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.69886From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.95246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.98637From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.32324From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.32573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.33042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
1.00321From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.08744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.20534From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001012.40728From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.94078From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.70474From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.4181From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (32)
ParalogWBGene00039073Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs an ortholog of C. elegans sdc-2. In C. elegans, sdc-2 is involved in dosage compensation by hypoactivation of X chromosome and negative regulation of transcription by RNA polymerase II.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG17307
Corresponding_CDS_historyCBG17307:bp194
CBG17307:bp255
Corresponding_transcriptCBG17307.1
Experimental_infoExpr_patternExpr1057546
Microarray_resultsGPL8303_CB6_WBGene00036977_A
GPL8303_CB6_WBGene00036977_B
GPL8303_CB6_WBGene00036977_C
GPL8303_CB6_WBGene00036977_D
GPL8303_CB6_WBGene00036977_E
GPL14143_CBG17307_6295-6354_0.817_1_A
GPL14143_CBG17307_7342-7401_0.815_2_C
GPL14143_CBG17307_8429-8488_0.757_384_B
ReferenceWBPaper00039962
WBPaper00055155
MethodGene