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WormBase Tree Display for Gene: WBGene00036645

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Name Class

WBGene00036645SMapS_parentSequencecb25.fpc4044c
IdentityVersion2
NameCGC_nameCbr-alkb-1From_analysisInferred_from_orthology
Sequence_nameCBG16811
Molecular_nameCBG16811
CBG16811.1
CBP40467
Other_nameCBG_16811Accession_evidenceNDBHE600944
Public_nameCbr-alkb-1
DB_infoDatabaseNDBlocus_tagCBG_16811
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:06WBPerson1971EventImportedInitial conversion from brigace
208 Feb 2019 15:42:26WBPerson1983Name_changeCGC_nameCbr-alkb-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classalkb
RNASeq_FPKMWBls:000000220.8218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
22.7841From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
25.435From_analysisRNASeq.briggsae.WBls:0000002.control_mean
32.6992From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
24.3912From_analysisRNASeq.briggsae.WBls:0000002.control_median
25.5758From_analysisRNASeq.briggsae.WBls:0000002.control_mean
25.9983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000316.2489From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
20.671From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
25.0931From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
21.9505From_analysisRNASeq.briggsae.WBls:0000003.control_mean
24.5096From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000427.4193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
27.9988From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
28.5783From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
22.3408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
28.2231From_analysisRNASeq.briggsae.WBls:0000004.control_mean
30.1118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
32.6653From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002712.5527From_analysisRNASeq.briggsae.WBls:0000027.control_mean
25.5806From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.78881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
9.28868From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
13.475From_analysisRNASeq.briggsae.WBls:0000027.control_median
13.8299From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.6613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003525.1147From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003819.4568From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
19.923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
25.3972From_analysisRNASeq.briggsae.WBls:0000038.control_median
27.0098From_analysisRNASeq.briggsae.WBls:0000038.control_mean
30.8714From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
37.7878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004128.0533From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
31.1373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
34.5907From_analysisRNASeq.briggsae.WBls:0000041.control_mean
34.9813From_analysisRNASeq.briggsae.WBls:0000041.control_median
38.8252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
40.3469From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
28.5316From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
31.9217From_analysisRNASeq.briggsae.WBls:0000041.control_median
32.7061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
33.2667From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
30.1985From_analysisRNASeq.briggsae.WBls:0000063.control_mean
36.1634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.5978From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
38.2433From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
38.9878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
31.2125From_analysisRNASeq.briggsae.WBls:0000063.control_mean
36.2826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
36.9402From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010126.1362From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
27.7754From_analysisRNASeq.briggsae.total_over_all_stages.control_median
26.5463From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
27.9144From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (26)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: 2OG-Fe(II) oxygenase superfamily; Alkylated DNA repair protein AlkB; Alpha-ketoglutarate-dependent dioxygenase AlkB-like; and Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily. Is an ortholog of C. elegans alkb-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG16811
Corresponding_CDS_historyCBG16811:bp194
CBG16811:bp255
Corresponding_transcriptCBG16811.1
Other_sequence (28)
Experimental_infoExpr_patternExpr1057030
Microarray_resultsGPL8303_CB6_WBGene00036645_A
GPL8303_CB6_WBGene00036645_B
GPL14143_CBG16811_679-738_0.517_141_A
GPL14143_CBG16811_771-830_0.822_11_B
GPL14143_CBG16811_847-906_0.871_1_C
MethodGene