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WormBase Tree Display for Gene: WBGene00035820

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Name Class

WBGene00035820SMapS_parentSequencecb25.fpc4030a2
IdentityVersion2
NameCGC_nameCbr-phf-5From_analysisInferred_from_orthology
Sequence_nameCBG15662
Molecular_nameCBG15662
CBG15662.1
CBP10072
Other_nameCBG_15662Accession_evidenceNDBHE600979
Public_nameCbr-phf-5
DB_infoDatabaseNDBlocus_tagCBG_15662
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-phf-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classphf
RNASeq_FPKMWBls:000000238.2247From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
39.3085From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
40.4505From_analysisRNASeq.briggsae.WBls:0000002.control_mean
43.8182From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
41.296From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.5634From_analysisRNASeq.briggsae.WBls:0000002.control_median
43.8326From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003115.14From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
115.997From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
116.855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
107.994From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
113.33From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000491.7026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
95.7862From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
99.8699From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
119.376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
72.2693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
93.4105From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
95.3257From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:000002712.7781From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.75454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
29.08From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.49967From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
10.9666From_analysisRNASeq.briggsae.WBls:0000027.control_median
13.4419From_analysisRNASeq.briggsae.WBls:0000027.control_mean
15.4336From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003515.3857From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003818.2903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
22.7523From_analysisRNASeq.briggsae.WBls:0000038.control_mean
23.8158From_analysisRNASeq.briggsae.WBls:0000038.control_median
29.3414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
33.7652From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.61227From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004138.7061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
46.7492From_analysisRNASeq.briggsae.WBls:0000041.control_mean
46.9451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
47.031From_analysisRNASeq.briggsae.WBls:0000041.control_median
47.1169From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
54.2287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
42.7538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
43.9247From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
45.4349From_analysisRNASeq.briggsae.WBls:0000041.control_median
45.6125From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006328.4482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
31.6343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
39.692From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
39.7812From_analysisRNASeq.briggsae.WBls:0000063.control_mean
46.2041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
52.9275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
38.0006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
38.8463From_analysisRNASeq.briggsae.WBls:0000063.control_median
39.4845From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010138.5719From_analysisRNASeq.briggsae.total_over_all_stages.control_median
41.9499From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
39.5003From_analysisRNASeq.briggsae.total_over_all_stages.control_median
47.1985From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00139252
Ortholog (28)
Structured_descriptionAutomated_descriptionPredicted to be involved in mRNA splicing, via spliceosome. Is an ortholog of C. elegans phf-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG15662
Corresponding_CDS_historyCBG15662:bp194
Corresponding_transcriptCBG15662.1
Other_sequence (63)
Experimental_infoExpr_patternExpr1063284
Microarray_resultsGPL8303_CB6_WBGene00035820_A
GPL8303_CB6_WBGene00035820_B
GPL14143_CBG15662_94-153_0.537_30_C
GPL14143_CBG15662_214-273_0.927_3_A
GPL14143_CBG15662_275-334_0.941_1_B
MethodGene