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WormBase Tree Display for Gene: WBGene00035620

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Name Class

WBGene00035620SMapS_parentSequencecb25.fpc4013
IdentityVersion2
NameCGC_nameCbr-acc-4From_analysisInferred_from_orthology
Sequence_nameCBG15319
Molecular_nameCBG15319
CBG15319.1
CBP48022
CBG15319.2
Other_nameCBG_15319Accession_evidenceNDBHE601407
Public_nameCbr-acc-4
DB_infoDatabaseNDBlocus_tagCBG_15319
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-acc-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classacc
RNASeq_FPKMWBls:00000022.47455From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.29701From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.30186From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.11463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.15995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.76275From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.88821From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.073623From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.147245From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.132364From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.249846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.310481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.487265From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.664048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.269973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.387266From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.412076From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.428612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.267461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.08137From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.76476From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.94545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.66352From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.72059From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.35981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000355.38294From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.28726From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.03423From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.59503From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.70672From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.15582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.34958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.23474From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.300577From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.443974From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.587372From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.791337From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.04266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.25979From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.33295From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.9322From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
2.90017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.217576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.558496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.651186From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.662028From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.840434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.04245From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.722129From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.74581From_analysisRNASeq.briggsae.WBls:0000063.control_median
1.02263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.04245From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.44209From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.03254From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.25081From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00139101
00139102
00139103
00139104
00139105
00139106
Ortholog (27)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans acc-4.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG15319
Corresponding_CDS_historyCBG15319:bp194
CBG15319:bp258
Corresponding_transcriptCBG15319.1
CBG15319.2
Other_sequenceCJC01577_1
Oden_isotig23163
Dviv_isotig30090
MH09101
JI246814.1
Acan_isotig13171
HG05981
HGC06230_1
Acan_isotig16347
JI240542.1
Experimental_infoExpr_patternExpr1066950
Microarray_resultsGPL8303_CB6_WBGene00035620_A
GPL14143_CBG15319_564-623_0.903_12_C
GPL14143_CBG15319_648-707_0.918_3_B
GPL14143_CBG15319_962-1021_0.907_6_A
ReferenceWBPaper00061589
MethodGene