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WormBase Tree Display for Gene: WBGene00035550

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Name Class

WBGene00035550SMapS_parentSequencecb25.fpc4010
IdentityVersion2
NameCGC_nameCbr-pat-12From_analysisInferred_from_orthology
Sequence_nameCBG15235
Molecular_name (15)
Other_nameCBG_15235Accession_evidenceNDBHE601055
Public_nameCbr-pat-12
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
229 Jan 2010 10:05:57WBPerson2970Name_changeCGC_nameCbr-pat-12
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpat
Allele (19)
RNASeq_FPKMWBls:0000002124.018From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
37.9124From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
84.8912From_analysisRNASeq.briggsae.WBls:0000002.control_mean
92.7433From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
30.5755From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
65.3279From_analysisRNASeq.briggsae.WBls:0000002.control_median
71.3123From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000314.8142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
4.01325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
9.41372From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
11.3756From_analysisRNASeq.briggsae.WBls:0000003.control_mean
15.2993From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000435.0393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
37.9636From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
40.8879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
36.4593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
36.4718From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
37.3416From_analysisRNASeq.briggsae.WBls:0000004.control_mean
37.8498From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:0000027109.481From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
120.852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
46.1089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
92.1473From_analysisRNASeq.briggsae.WBls:0000027.control_mean
115.166From_analysisRNASeq.briggsae.WBls:0000027.control_median
119.018From_analysisRNASeq.briggsae.WBls:0000027.control_mean
199.629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035107.017From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038137.18From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
142.846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
39.5509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
54.2846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
93.4654From_analysisRNASeq.briggsae.WBls:0000038.control_mean
95.7323From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:000004128.3948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
34.1094From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
34.4561From_analysisRNASeq.briggsae.WBls:0000041.control_median
34.8027From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
38.6518From_analysisRNASeq.briggsae.WBls:0000041.control_mean
57.3003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
11.8517From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
33.6667From_analysisRNASeq.briggsae.WBls:0000041.control_mean
35.5415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006328.9142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
31.6095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
35.619From_analysisRNASeq.briggsae.WBls:0000063.control_mean
37.1651From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
39.0859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
41.3204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
38.1255From_analysisRNASeq.briggsae.WBls:0000063.control_median
39.3418From_analysisRNASeq.briggsae.WBls:0000063.control_mean
57.9559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010141.3204From_analysisRNASeq.briggsae.total_over_all_stages.control_median
65.2993From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
39.3184From_analysisRNASeq.briggsae.total_over_all_stages.control_median
61.982From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (22)
Structured_descriptionAutomated_descriptionIs an ortholog of C. elegans pat-12. In C. elegans, pat-12 is involved in embryonic morphogenesis and hemidesmosome assembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG15235a
CBG15235b
CBG15235c
CBG15235d
CBG15235e
Corresponding_CDS_historyCBG15235:bp255
Corresponding_transcriptCBG15235a.1
CBG15235b.1
CBG15235c.1
CBG15235d.1
CBG15235e.1
Other_sequence (79)
Experimental_infoExpr_patternExpr1052920
Microarray_resultsGPL8303_CB6_WBGene00035550_A
GPL14143_CBG15235_1746-1805_0.426_290_B
GPL14143_CBG15235_2007-2066_0.973_1_A
GPL14143_CBG15235_2031-2090_0.966_2_C
MethodGene