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WormBase Tree Display for Gene: WBGene00035341

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Name Class

WBGene00035341SMapS_parentSequencecb25.fpc3857b
IdentityVersion1
NameSequence_nameCBG14973
Molecular_nameCBG14973
CBG14973.1
CBP18144
Other_nameCBG_14973Accession_evidenceNDBHE600904
Public_nameCBG14973
DB_infoDatabaseNDBlocus_tagCBG_14973
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000000249.7935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
51.647From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
52.5044From_analysisRNASeq.briggsae.WBls:0000002.control_mean
56.0728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
53.8599From_analysisRNASeq.briggsae.WBls:0000002.control_median
64.2154From_analysisRNASeq.briggsae.WBls:0000002.control_mean
99.3482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.785795From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.57159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.523863From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.419862From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.871694From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.93861From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.16911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
11.9368From_analysisRNASeq.briggsae.WBls:0000027.control_mean
27.8521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.78926From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.133From_analysisRNASeq.briggsae.WBls:0000027.control_mean
17.3207From_analysisRNASeq.briggsae.WBls:0000027.control_median
28.7216From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003520.0808From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038144.478From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
49.97From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
53.5471From_analysisRNASeq.briggsae.WBls:0000038.control_median
57.1241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
64.9754From_analysisRNASeq.briggsae.WBls:0000038.control_mean
8.32948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041100.661From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
110.153From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
25.528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
63.4212From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
74.9408From_analysisRNASeq.briggsae.WBls:0000041.control_mean
82.0411From_analysisRNASeq.briggsae.WBls:0000041.control_median
106.609From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
45.04From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
75.2354From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006324.7761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
25.3897From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
27.7056From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
45.0761From_analysisRNASeq.briggsae.WBls:0000063.control_mean
58.881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
88.6282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
23.545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
26.5476From_analysisRNASeq.briggsae.WBls:0000063.control_median
41.4876From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010128.9449From_analysisRNASeq.briggsae.total_over_all_stages.control_median
43.8493From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
28.2868From_analysisRNASeq.briggsae.total_over_all_stages.control_median
41.5592From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Contained_in_operonCBOPA0960
Ortholog (19)
ParalogWBGene00030216Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031142Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033824Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035340Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035346Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00086630Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-htz-1 and Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Thioredoxin-like superfamily; Thioredoxin domain; and Thioredoxin. Is an ortholog of C. elegans W01B11.6.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14973
Corresponding_CDS_historyCBG14973:bp194
Corresponding_transcriptCBG14973.1
Experimental_infoExpr_patternExpr1053491
Microarray_resultsGPL8303_CB6_WBGene00035341_A
GPL14143_CBG14973_1-60_0.923_2_C
GPL14143_CBG14973_124-183_0.934_1_B
GPL14143_CBG14973_275-334_0.882_5_A
Expression_clusterWBPaper00059178:Cbr-htz-1(gu167)_upregulated
WBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene