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WormBase Tree Display for Gene: WBGene00034993

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Name Class

WBGene00034993SMapS_parentSequencecb25.fpc3857a
IdentityVersion2
NameCGC_nameCbr-rpl-25.1From_analysisInferred_from_orthology
Sequence_nameCBG14529
Molecular_nameCBG14529
CBG14529.1
CBP03565
Other_nameCBG_14529Accession_evidenceNDBHE600983
Public_nameCbr-rpl-25.1
DB_infoDatabaseNDBlocus_tagCBG_14529
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-rpl-25.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpl
AlleleWBVar00121483
RNASeq_FPKMWBls:00000021722.33From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1764.02From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1827.03From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1994.75From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1788.01From_analysisRNASeq.briggsae.WBls:0000002.control_median
1811.99From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1823.27From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003182.858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
198.249From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
213.64From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
191.194From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
195.897From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004466.508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
477.738From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
488.969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
477.434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
574.949From_analysisRNASeq.briggsae.WBls:0000004.control_mean
672.706From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
769.13From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271782.18From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2238.63From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2823.35From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4449.25From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2451.66From_analysisRNASeq.briggsae.WBls:0000027.control_median
2664.68From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
2783.69From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000353505.18From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810341.8From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1317.25From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2781.69From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2794.02From_analysisRNASeq.briggsae.WBls:0000038.control_median
2806.36From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4311.77From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:0000041320.342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
388.162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
407.337From_analysisRNASeq.briggsae.WBls:0000041.control_median
419.214From_analysisRNASeq.briggsae.WBls:0000041.control_mean
426.513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
541.839From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
348.036From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
395.383From_analysisRNASeq.briggsae.WBls:0000041.control_median
402.603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
404.582From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
556.712From_analysisRNASeq.briggsae.WBls:0000063.control_mean
604.784From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
614.562From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
659.681From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
904.535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1206.65From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
637.122From_analysisRNASeq.briggsae.WBls:0000063.control_median
665.035From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001011317.25From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1900.82From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1675.48From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
836.833From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00138490
00138491
00138492
Ortholog (19)
ParalogWBGene00026823Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Is an ortholog of C. elegans rpl-25.1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14529
Corresponding_CDS_historyCBG14529:bp194
Corresponding_transcriptCBG14529.1
Other_sequence (186)
Experimental_infoExpr_patternExpr1054833
Microarray_resultsGPL8303_CB6_WBGene00034993_A
GPL14143_CBG14529_13-72_0.827_17_C
GPL14143_CBG14529_233-292_0.882_6_B
GPL14143_CBG14529_273-332_0.936_1_A
Expression_clusterWBPaper00051425:CB_L4_vs_embryo_upregulated
MethodGene