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WormBase Tree Display for Gene: WBGene00034963

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Name Class

WBGene00034963SMapS_parentSequencecb25.fpc3857a
IdentityVersion2
NameCGC_nameCbr-ham-2From_analysisInferred_from_orthology
Sequence_nameCBG14489
Molecular_nameCBG14489a
CBG14489a.1
CBP34700
CBG14489b
CBP41150
CBG14489b.1
Other_nameCBG_14489Accession_evidenceNDBHE600983
Public_nameCbr-ham-2
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-ham-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classham
Allele (13)
RNASeq_FPKMWBls:000000211.0638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
6.39247From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
8.75826From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.81851From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.18658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.36534From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.60549From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000312.3232From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
19.4132From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
5.23328From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
10.0405From_analysisRNASeq.briggsae.WBls:0000003.control_mean
5.47502From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000444.9705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
48.9171From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
52.8637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
49.1901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
52.1502From_analysisRNASeq.briggsae.WBls:0000004.control_mean
56.3658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
57.3608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.567178From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.18889From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.23057From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.93565From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
10.3391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.56227From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.00771From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000358.27923From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.607591From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
10.9204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.79593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.02324From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.39362From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.25055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000411.9814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.02567From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.11082From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.12051From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.21535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.22086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.21811From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.66812From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.32035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.2451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.48471From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.51979From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.64488From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.99787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.26102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.78591From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.82138From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.29191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001015.23328From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.90649From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.6332From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.35415From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (27)
ParalogWBGene00035629Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00035627Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Zinc finger C2H2 superfamily and Zinc finger C2H2-type. Is an ortholog of C. elegans ham-2. In C. elegans, ham-2 is involved in cell fate determination; cell migration; and regulation of neuron differentiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14489a
CBG14489b
Corresponding_CDS_historyCBG14489:bp194
Corresponding_transcriptCBG14489a.1
CBG14489b.1
Other_sequence (14)
Experimental_infoExpr_patternExpr1058600
Microarray_resultsGPL8303_CB6_WBGene00034963_A
GPL14143_CBG14489_840-899_0.839_3_C
GPL14143_CBG14489_958-1017_0.850_1_A
GPL14143_CBG14489_1123-1182_0.845_2_B
MethodGene