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WormBase Tree Display for Gene: WBGene00034898

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Name Class

WBGene00034898SMapS_parentSequencecb25.fpc3857a
IdentityVersion2
NameCGC_nameCbr-hlh-13From_analysisInferred_from_orthology
Sequence_nameCBG14376
Molecular_nameCBG14376
CBG14376.1
CBP18038
Other_nameCBG_14376Accession_evidenceNDBHE600983
Public_nameCbr-hlh-13
DB_infoDatabaseNDBlocus_tagCBG_14376
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-hlh-13
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhlh
RNASeq_FPKMWBls:00000020.588564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.04338From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.24261From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.29897From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.093From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.24185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.24223From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.297912From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.595824From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.658455From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.37954From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000412.7826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
12.9089From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
13.0352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
11.0668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
11.1566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
12.2989From_analysisRNASeq.briggsae.WBls:0000004.control_mean
13.4532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (11)
WBls:000002710.6427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.08876From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.57715From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.5017From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.91464From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.41152From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.904525From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.297376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0.532156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.544208From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.55626From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.782551From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.74441From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000410.070608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.11055From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.150492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.176631From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.485422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.317957From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.326291From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.569441From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.681783From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.243197From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.461398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.754588From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.08651From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.173019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.231501From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.55626From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.84902From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.638803From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.55943From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00138375
Ortholog (25)
ParalogWBGene00035748Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036707Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037905Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037907Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038828Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein dimerization activity. Is an ortholog of C. elegans hlh-13. In C. elegans, hlh-13 is involved in dauer exit and response to oxidative stress.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG14376
Corresponding_CDS_historyCBG14376:bp194
CBG14376:bp255
Corresponding_transcriptCBG14376.1
Other_sequence (15)
Experimental_infoExpr_patternExpr1057487
Microarray_resultsGPL8303_CB6_WBGene00034898_A
GPL8303_CB6_WBGene00034898_B
GPL14143_CBG14376_60-119_0.878_7_C
GPL14143_CBG14376_152-211_0.887_4_B
GPL14143_CBG14376_294-353_0.835_14_A
MethodGene