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WormBase Tree Display for Gene: WBGene00034653

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Name Class

WBGene00034653SMapS_parentSequencecb25.fpc3835
IdentityVersion4
NameCGC_nameCbr-zipt-15From_analysisInferred_from_orthology
Sequence_nameCBG13990
Molecular_nameCBG13990
CBG13990.1
CBP40022
Other_nameCBG_13990Accession_evidenceNDBHE601467
Cbr-zipt-20From_analysisInferred_from_orthology
Public_nameCbr-zipt-15
DB_infoDatabaseNDBlocus_tagCBG_13990
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
224 Jul 2008 11:56:36WBPerson1847EventAcquires_mergeWBGene00034654
329 Nov 2016 12:34:27WBPerson2970Name_changeCGC_nameCbr-zipt-20
408 Jun 2017 16:05:31WBPerson2970Name_changeCGC_nameCbr-zipt-15
Other_nameCbr-zipt-20
Acquires_mergeWBGene00034654
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classzipt
RNASeq_FPKMWBls:000000236.3973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
38.7888From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
39.5847From_analysisRNASeq.briggsae.WBls:0000002.control_mean
43.5679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
40.4859From_analysisRNASeq.briggsae.WBls:0000002.control_mean
40.9893From_analysisRNASeq.briggsae.WBls:0000002.control_median
43.1897From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000346.0408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
54.4464From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
62.8519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
58.7375From_analysisRNASeq.briggsae.WBls:0000003.control_mean
67.3197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000431.3969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
33.0302From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
34.6634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
26.6778From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
32.0977From_analysisRNASeq.briggsae.WBls:0000004.control_mean
32.6138From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
35.1365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002717.9145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.43314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
7.4785From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.60871From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.0394From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.405From_analysisRNASeq.briggsae.WBls:0000027.control_median
15.3314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003522.0995From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.3934From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
18.9823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
20.4664From_analysisRNASeq.briggsae.WBls:0000038.control_median
21.9506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
22.6696From_analysisRNASeq.briggsae.WBls:0000038.control_mean
33.3521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004140.5123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
57.5784From_analysisRNASeq.briggsae.WBls:0000041.control_mean
61.7525From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
62.4733From_analysisRNASeq.briggsae.WBls:0000041.control_median
63.194From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
64.8549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
44.2907From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
46.0704From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
53.4458From_analysisRNASeq.briggsae.WBls:0000041.control_mean
53.9114From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
27.4143From_analysisRNASeq.briggsae.WBls:0000063.control_mean
31.4724From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
31.53From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
36.4423From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
37.627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
29.2356From_analysisRNASeq.briggsae.WBls:0000063.control_mean
33.9861From_analysisRNASeq.briggsae.WBls:0000063.control_median
38.3419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010131.53From_analysisRNASeq.briggsae.total_over_all_stages.control_median
31.6613From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
33.3461From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
33.6696From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00138152
00138153
00138154
00138155
Contained_in_operonCBOPA0394
Ortholog (29)
ParalogWBGene00041604Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable metal ion transmembrane transporter activity. Predicted to be involved in metal ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans zipt-15.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13990
Corresponding_CDS_historyCBG13990:bp194
CBG13990:bp255
Corresponding_transcriptCBG13990.1
Other_sequence (61)
Experimental_infoExpr_patternExpr1069399
Microarray_resultsGPL8303_CB6_WBGene00034653_A
GPL8303_CB6_WBGene00034653_B
GPL8303_CB6_WBGene00034654_A
GPL14143_CBG13990_949-1008_0.950_1_C
GPL14143_CBG13990_1137-1196_0.915_4_A
GPL14143_CBG13990_1231-1290_0.926_3_B
MethodGene