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WormBase Tree Display for Gene: WBGene00034317

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Name Class

WBGene00034317SMapS_parentSequencecb25.fpc3052b
IdentityVersion2
NameCGC_nameCbr-npp-8From_analysisInferred_from_orthology
Sequence_nameCBG13567
Molecular_nameCBG13567
CBG13567.1
CBP43859
Other_nameCBG_13567Accession_evidenceNDBHE600980
Public_nameCbr-npp-8
DB_infoDatabaseNDBlocus_tagCBG_13567
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-npp-8
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnpp
AlleleWBVar00120027
WBVar00120028
WBVar00120029
RNASeq_FPKMWBls:000000214.6887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
28.0417From_analysisRNASeq.briggsae.WBls:0000002.control_mean
31.9474From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
37.4889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
31.7724From_analysisRNASeq.briggsae.WBls:0000002.control_mean
34.7182From_analysisRNASeq.briggsae.WBls:0000002.control_median
42.9645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003103.089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
75.8506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
89.4698From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
107.858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
95.5992From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000447.646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
48.0007From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
48.3554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
47.7947From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
48.642From_analysisRNASeq.briggsae.WBls:0000004.control_mean
49.502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
49.9121From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:000002711.4284From_analysisRNASeq.briggsae.WBls:0000027.control_mean
23.4178From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.71061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
8.15672From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
11.7823From_analysisRNASeq.briggsae.WBls:0000027.control_median
12.4232From_analysisRNASeq.briggsae.WBls:0000027.control_mean
15.4078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003518.5249From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.3756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
14.7608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
16.7199From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.2763From_analysisRNASeq.briggsae.WBls:0000038.control_median
19.7918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
20.9514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004124.1302From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
61.407From_analysisRNASeq.briggsae.WBls:0000041.control_mean
69.539From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
72.1408From_analysisRNASeq.briggsae.WBls:0000041.control_median
74.7427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
77.2161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
21.8096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
26.8028From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
48.1709From_analysisRNASeq.briggsae.WBls:0000041.control_median
49.0401From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
31.0176From_analysisRNASeq.briggsae.WBls:0000063.control_mean
37.7418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
37.8026From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.9048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
41.6389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
31.2505From_analysisRNASeq.briggsae.WBls:0000063.control_mean
32.415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
37.7722From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010123.4178From_analysisRNASeq.briggsae.total_over_all_stages.control_median
32.7217From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
29.3751From_analysisRNASeq.briggsae.total_over_all_stages.control_median
35.3525From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00132571
00132572
00132573
Ortholog (29)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of nuclear pore. Predicted to be involved in nucleocytoplasmic transport. Predicted to be part of nuclear pore. Is an ortholog of C. elegans npp-8. In C. elegans, npp-8 is involved in embryo development; nucleus organization; and regulation of exit from mitosis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBG13567
Corresponding_CDS_historyCBG13567:bp194
CBG13567:bp255
Corresponding_transcriptCBG13567.1
Other_sequence (21)
Experimental_infoExpr_patternExpr1068485
Microarray_resultsGPL8303_CB6_WBGene00034317_A
GPL8303_CB6_WBGene00034317_B
GPL14143_CBG13567_3206-3265_0.903_15_C
GPL14143_CBG13567_3232-3291_0.853_66_B
GPL14143_CBG13567_3418-3477_0.915_9_A
MethodGene