WormBase Tree Display for Gene: WBGene00034271

WBGene00034271 SMap: S_parent: Sequence: cb25.fpc3052b
  Identity: Version: 2
    Name: CGC_name: Cbr-pgp-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG13514
      Molecular_name: CBG13514
        CBG13514.1
        CBP17817
      Other_name: CBG_13514 Accession_evidence: NDB HE600980
      Public_name: Cbr-pgp-1
    DB_info: Database: NDB locus_tag CBG_13514
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:03 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-pgp-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pgp
    Allele: WBVar00119960
    RNASeq_FPKM: WBls:0000002 3.01709 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        6.11357 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        7.43509 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        7.88853 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        6.69461 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        7.66181 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        8.43775 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.103472 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        0.269643 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.435814 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.179762 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 1.07145 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        1.22327 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1.37508 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.827755 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        1.1475 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        1.19714 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        1.26609 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 14.1828 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        30.2569 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.32103 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        8.97061 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        11.012 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        13.3901 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        9.99131 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 5.68209 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 12.6688 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        13.0191 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        20.1553 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        22.0221 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        2.61487 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        5.88293 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 2.48321 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        2.5718 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        2.93257 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.02082 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        3.29335 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        3.73491 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        1.35356 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        2.94134 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        4.2112 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        6.10204 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        6.67349 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        7.14703 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        7.95065 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        8.73903 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        3.33578 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        5.641 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        6.91026 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 3.32103 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        6.07357 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        3.30719 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        5.46776 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00137763
      00137764
      00137765
      00137766
      00137767
    Ortholog (42)
    Paralog (29)
    Structured_description: Automated_description: Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans pgp-1. In C. elegans, pgp-1 is involved in defense response to other organism; response to metal ion; and response to nematicide. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG13514
    Corresponding_transcript: CBG13514.1
    Other_sequence (30)
  Experimental_info: Expr_pattern: Expr1052732
    Microarray_results: GPL8303_CB6_WBGene00034271_A
      GPL8303_CB6_WBGene00034271_B
      GPL14143_CBG13514_1756-1815_0.712_316_B
      GPL14143_CBG13514_1812-1871_0.788_137_A
      GPL14143_CBG13514_3662-3721_0.933_8_C
  Method: Gene