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WormBase Tree Display for Gene: WBGene00034258

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Name Class

WBGene00034258SMapS_parentSequencecb25.fpc3052b
IdentityVersion2
NameCGC_nameCbr-pnp-1From_analysisInferred_from_orthology
Sequence_nameCBG13501
Molecular_nameCBG13501a
CBG13501a.1
CBP03308
CBG13501b
CBP45617
CBG13501b.1
Other_nameCBG_13501Accession_evidenceNDBHE600980
Public_nameCbr-pnp-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
201 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameCbr-pnp-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpnp
RNASeq_FPKMWBls:0000002122.427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
163.382From_analysisRNASeq.briggsae.WBls:0000002.control_mean
169.443From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
198.276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
124.795From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
147.119From_analysisRNASeq.briggsae.WBls:0000002.control_median
153.735From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000310.7074From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
12.4845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
8.93026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
8.31488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
9.90988From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000424.6418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
25.9132From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
27.1845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
25.3704From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
26.3657From_analysisRNASeq.briggsae.WBls:0000004.control_mean
26.4296From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
28.2021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002715.03From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
34.4306From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
41.0439From_analysisRNASeq.briggsae.WBls:0000027.control_mean
73.671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
153.654From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
54.0508From_analysisRNASeq.briggsae.WBls:0000027.control_median
69.1964From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035182.845From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038129.935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
153.708From_analysisRNASeq.briggsae.WBls:0000038.control_mean
157.667From_analysisRNASeq.briggsae.WBls:0000038.control_median
185.4From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
244.608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
54.8873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041145.629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
32.8305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
44.0369From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
45.2562From_analysisRNASeq.briggsae.WBls:0000041.control_median
46.4756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
67.243From_analysisRNASeq.briggsae.WBls:0000041.control_mean
101.101From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
122.61From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
73.7883From_analysisRNASeq.briggsae.WBls:0000041.control_median
82.1138From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
68.7852From_analysisRNASeq.briggsae.WBls:0000063.control_mean
77.4806From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
78.1026From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
90.2721From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
98.0709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
70.8736From_analysisRNASeq.briggsae.WBls:0000063.control_mean
79.7088From_analysisRNASeq.briggsae.WBls:0000063.control_median
81.3151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101113.583From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
78.1026From_analysisRNASeq.briggsae.total_over_all_stages.control_median
104.36From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
79.7088From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00137752
00137753
00137754
00137755
Ortholog (33)
ParalogWBGene00033820Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00036760Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable purine-nucleoside phosphorylase activity. Predicted to be involved in nucleoside metabolic process. Is an ortholog of C. elegans pnp-1. In C. elegans, pnp-1 is involved in innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13501a
CBG13501b
Corresponding_CDS_historyCBG13501:bp194
Corresponding_transcriptCBG13501a.1
CBG13501b.1
Other_sequence (146)
Experimental_infoExpr_patternExpr1050462
Microarray_resultsGPL8303_CB6_WBGene00034258_A
GPL8303_CB6_WBGene00034258_B
GPL8303_CB6_WBGene00034258_C
GPL8303_CB6_WBGene00034258_D
GPL8303_CB6_WBGene00034258_E
GPL14143_CBG13501_248-307_0.912_14_C
GPL14143_CBG13501_751-810_0.920_8_B
GPL14143_CBG13501_814-873_0.951_1_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene