WormBase Tree Display for Gene: WBGene00034253

WBGene00034253 SMap: S_parent: Sequence: cb25.fpc3052b
  Identity: Version: 3
    Name: CGC_name: Cbr-mrpl-55 From_analysis: Inferred_from_orthology
      Sequence_name: CBG13496
      Molecular_name: CBG13496
        CBG13496.1
        CBP17811
      Other_name: Cbr-tag-313 From_analysis: Inferred_from_orthology
        CBG_13496 Accession_evidence: NDB HE600980
      Public_name: Cbr-mrpl-55
    DB_info: Database: NDB locus_tag CBG_13496
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:03 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-tag-313
        3 10 Jun 2011 16:53:57 WBPerson2970 Name_change: CGC_name: Cbr-mrpl-55
                Other_name: Cbr-tag-313
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mrpl
    Allele: WBVar00119950
      WBVar00119951
      WBVar00119952
    RNASeq_FPKM: WBls:0000002 116.642 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        50.1315 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        52.4926 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        73.0887 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        54.713 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        56.9334 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        69.0499 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 50.9617 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        57.8166 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        64.6715 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        43.2935 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        52.9756 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 61.4384 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        62.752 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        64.0656 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        58.259 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        70.4088 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        77.5306 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        90.7503 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 11.8166 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        23.8592 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        4.31736 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        55.4438 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        27.4504 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        28.6655 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        43.0842 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 38.0647 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 40.8606 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        44.44 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        56.026 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        60.2232 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        67.6119 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        87.9803 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 80.961 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        82.8816 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        87.1377 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        87.4561 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        92.0307 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        92.6776 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        102.038 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        106.157 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        157.519 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        92.3541 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        38.2475 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        40.0771 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        43.0611 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        43.837 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        64.2623 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        40.6866 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        43.4491 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        52.8822 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 55.7785 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        59.5506 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        58.9048 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        60.6312 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00137744
      00137745
    Ortholog (15)
    Structured_description: Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is an ortholog of C. elegans mrpl-55. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG13496
    Corresponding_CDS_history: CBG13496:bp194
    Corresponding_transcript: CBG13496.1
    Other_sequence (28)
  Experimental_info: Expr_pattern: Expr1051254
    Microarray_results: GPL8303_CB6_WBGene00034253_A
      GPL8303_CB6_WBGene00034253_B
      GPL14143_CBG13496_112-171_0.950_6_B
      GPL14143_CBG13496_217-276_0.967_2_A
      GPL14143_CBG13496_314-373_0.971_1_C
  Method: Gene