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WormBase Tree Display for Gene: WBGene00034210

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Name Class

WBGene00034210SMapS_parentSequencecb25.fpc3052a
IdentityVersion2
NameCGC_nameCbr-vab-1From_analysisInferred_from_orthology
Sequence_nameCBG13447
Molecular_nameCBG13447
CBG13447.1
CBP03296
Other_nameCBG_13447Accession_evidenceNDBHE600919
Public_nameCbr-vab-1
DB_infoDatabaseNDBlocus_tagCBG_13447
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vab-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvab
AlleleWBVar00119836
WBVar00119837
RNASeq_FPKMWBls:000000216.0047From_analysisRNASeq.briggsae.WBls:0000002.control_mean
19.7203From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
22.7862From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
5.50761From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
10.1116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
14.5314From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.9159From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000330.6033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
31.251From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
31.8987From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
31.4577From_analysisRNASeq.briggsae.WBls:0000003.control_mean
31.871From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000446.4825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
47.9623From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
49.4421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
42.8052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
47.952From_analysisRNASeq.briggsae.WBls:0000004.control_mean
48.0254From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
53.0047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002714.6572From_analysisRNASeq.briggsae.WBls:0000027.control_mean
15.8682From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
22.6647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.43854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
17.2452From_analysisRNASeq.briggsae.WBls:0000027.control_mean
19.2665From_analysisRNASeq.briggsae.WBls:0000027.control_median
25.0092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003531.1342From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.5716From_analysisRNASeq.briggsae.WBls:0000038.control_mean
13.0843From_analysisRNASeq.briggsae.WBls:0000038.control_median
16.3763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.0365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
7.08121From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.79232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004114.6226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
20.0074From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
20.5312From_analysisRNASeq.briggsae.WBls:0000041.control_median
20.9585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
24.3445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
10.1519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
13.824From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
17.3342From_analysisRNASeq.briggsae.WBls:0000041.control_mean
17.3633From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000635.12367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
5.17332From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
5.44546From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
5.96107From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.1694From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
7.89352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.80743From_analysisRNASeq.briggsae.WBls:0000063.control_median
6.62506From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.94498From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010115.8682From_analysisRNASeq.briggsae.total_over_all_stages.control_median
17.3214From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
16.1222From_analysisRNASeq.briggsae.total_over_all_stages.control_median
19.6597From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137694
00137695
Ortholog (32)
Paralog (27)
Structured_descriptionAutomated_descriptionPredicted to enable protein kinase activity. Is an ortholog of C. elegans vab-1. In C. elegans, vab-1 is involved in several processes, including cell development; embryonic morphogenesis; and regulation of axon guidance.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13447
Corresponding_CDS_historyCBG13447:bp194
Corresponding_transcriptCBG13447.1
Other_sequenceDviv_isotig32402
CJC11039_1
MIC07144_1
CJC02089_1
CBC06224_1
DAC00384_1
DA00034
MI07943
JI164913.1
CJC09783_1
Experimental_infoExpr_patternExpr1067001
Microarray_resultsGPL8303_CB6_WBGene00034210_A
GPL8303_CB6_WBGene00034210_B
GPL8303_CB6_WBGene00034210_C
GPL8303_CB6_WBGene00034210_D
GPL8303_CB6_WBGene00034210_E
GPL14143_CBG13447_2377-2436_0.800_5_C
GPL14143_CBG13447_2444-2503_0.626_233_B
GPL14143_CBG13447_2667-2726_0.788_17_A
MethodGene