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WormBase Tree Display for Gene: WBGene00034157

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Name Class

WBGene00034157SMapS_parentSequencecb25.fpc3052a
IdentityVersion2
NameCGC_nameCbr-lov-1From_analysisInferred_from_orthology
Sequence_nameCBG13381
Molecular_nameCBG13381a
CBG13381a.1
CBP40497
CBG13381b
CBP38509
CBG13381b.1
Other_nameCBG_13381Accession_evidenceNDBHE600919
Public_nameCbr-lov-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lov-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlov
Allele (13)
RNASeq_FPKMWBls:00000020.020094From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.190876From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.263907From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.288628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.19223From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.196291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.230099From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.980533From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.27539From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.57024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.28561From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.30605From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.373782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.392485From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.411188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
0.389432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.410785From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.42177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.457751From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.019434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.030773From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.032167From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.046294From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.022951From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
0.026862From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.029863From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.122021From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.018916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.020811From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0.02541From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.031905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.032423From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000410.150703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.211529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.236092From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.260656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.908057From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.00934From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.635From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.76716From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.14892From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
3.82178From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.045835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.059616From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.118698From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.122831From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.159663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.230345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.089378From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.104038From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.117256From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.118698From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.303018From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.155183From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.490575From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (21)
ParalogWBGene00032366Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034451Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Polycystin cation channel; Polycystin cation channel, PKD1/PKD2; PLAT/LH2 domain; PLAT/LH2 domain superfamily; and GPS motif. Is an ortholog of C. elegans lov-1. In C. elegans, lov-1 is involved in response to hermaphrodite contact and vulval location.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13381a
CBG13381b
Corresponding_CDS_historyCBG13381:bp255
Corresponding_transcriptCBG13381a.1
CBG13381b.1
Other_sequenceJI173898.1
JO468300.1
JI164556.1
Experimental_infoExpr_patternExpr1055273
Microarray_resultsGPL8303_CB6_WBGene00034157_A
GPL8303_CB6_WBGene00034157_B
GPL14143_CBG13381_4729-4788_0.752_277_C
GPL14143_CBG13381_4791-4850_0.721_417_B
GPL14143_CBG13381_5016-5075_0.807_6_A
MethodGene