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WormBase Tree Display for Gene: WBGene00034135

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Name Class

WBGene00034135SMapS_parentSequencecb25.fpc3052a
IdentityVersion2
NameCGC_nameCbr-pgp-11From_analysisInferred_from_orthology
Sequence_nameCBG13356
Molecular_nameCBG13356
CBG13356.1
CBP40420
Other_nameCBG_13356Accession_evidenceNDBHE600919
Public_nameCbr-pgp-11
DB_infoDatabaseNDBlocus_tagCBG_13356
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pgp-11
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpgp
RNASeq_FPKMWBls:000000210.2059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.68511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.68551From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.85884From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.86165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
6.60954From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.68531From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.074029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.37935From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.68467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
2.05065From_analysisRNASeq.briggsae.WBls:0000003.control_mean
3.39326From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000415.8187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
15.9402From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
16.0617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
14.7727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
14.8751From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
15.4877From_analysisRNASeq.briggsae.WBls:0000004.control_mean
15.9104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.299777From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.713709From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.33867From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.00251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
11.2288From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
1.85811From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.8112From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003513.8989From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.09492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
4.96412From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.61511From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.10925From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.25438From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000413.72808From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.9656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.60102From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.80422From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.23644From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.28675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.01989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.12816From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.28273From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.45965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000632.27363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.64668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.70074From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.22641From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.98837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
4.52263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
11.101From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
3.34455From_analysisRNASeq.briggsae.WBls:0000063.control_median
4.53884From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001014.52263From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.20604From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.12816From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.01572From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137619
00137620
00137621
00137622
00137623
Ortholog (49)
Paralog (29)
Structured_descriptionAutomated_descriptionPredicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans pgp-11. In C. elegans, pgp-11 is involved in regulatory ncRNA-mediated post-transcriptional gene silencing.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13356
Corresponding_CDS_historyCBG13356:bp255
Corresponding_transcriptCBG13356.1
Other_sequenceDviv_isotig34777
CR08285
ACC21384_1
JI243710.1
Name_isotig01082
CRC06348_1
EX552750.1
Experimental_infoExpr_patternExpr1057449
Microarray_resultsGPL8303_CB6_WBGene00034135_A
GPL8303_CB6_WBGene00034135_B
GPL14143_CBG13356_3347-3406_0.678_294_C
GPL14143_CBG13356_3418-3477_0.799_11_B
GPL14143_CBG13356_3485-3544_0.798_16_A
MethodGene