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WormBase Tree Display for Gene: WBGene00033983

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Name Class

WBGene00033983SMapS_parentSequencecb25.fpc2976
IdentityVersion1
NameSequence_nameCBG13183
Molecular_nameCBG13183
CBG13183.1
CBP39429
Other_nameCBG_13183Accession_evidenceNDBHE601226
Public_nameCBG13183
DB_infoDatabaseNDBlocus_tagCBG_13183
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000000212.2062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
15.3635From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.6085From_analysisRNASeq.briggsae.WBls:0000002.control_mean
22.2559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
17.3453From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.4595From_analysisRNASeq.briggsae.WBls:0000002.control_median
19.5555From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000320.7662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
27.5968From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
34.4275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
29.2016From_analysisRNASeq.briggsae.WBls:0000003.control_mean
32.411From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000436.1633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
36.7536From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
37.3438From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
33.9493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
34.1638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
36.7301From_analysisRNASeq.briggsae.WBls:0000004.control_mean
42.0304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.23052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
24.2558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.08436From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.85689From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.1001From_analysisRNASeq.briggsae.WBls:0000027.control_median
11.4216From_analysisRNASeq.briggsae.WBls:0000027.control_mean
16.1159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003512.5162From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.1838From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
12.2496From_analysisRNASeq.briggsae.WBls:0000038.control_median
12.3154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.2442From_analysisRNASeq.briggsae.WBls:0000038.control_mean
36.5719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.90587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004116.1491From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
18.1209From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
22.0534From_analysisRNASeq.briggsae.WBls:0000041.control_mean
22.1283From_analysisRNASeq.briggsae.WBls:0000041.control_median
26.1356From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
27.8081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
18.0319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
19.2441From_analysisRNASeq.briggsae.WBls:0000041.control_median
20.3673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
21.1021From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006327.5592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
29.5279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
32.882From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
34.4318From_analysisRNASeq.briggsae.WBls:0000063.control_mean
38.3415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
43.8486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
22.3266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
31.205From_analysisRNASeq.briggsae.WBls:0000063.control_median
32.4143From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010120.7662From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.4161From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
21.511From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.632From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (27)
ParalogWBGene00026772Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031466Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032773Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032774Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035844Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038648Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038896Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Pre-rRNA-processing protein Ipi1, N-terminal; Armadillo-type fold; Armadillo-like helical; Rix1 complex component involved in 60S ribosome maturation; and Testis-expressed protein 10/pre-rRNA-processing protein Ipi1. Is an ortholog of C. elegans Y48A6C.4.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13183
Corresponding_CDS_historyCBG13183:bp194
CBG13183:bp255
Corresponding_transcriptCBG13183.1
Other_sequenceCBC08125_1
CJC09707_1
HBC16354_1
EX914738.1
Experimental_infoExpr_patternExpr1062083
Microarray_resultsGPL8303_CB6_WBGene00033983_A
GPL14143_CBG13183_117-176_0.891_17_B
GPL14143_CBG13183_441-500_0.926_7_A
GPL14143_CBG13183_690-749_0.824_42_C
MethodGene