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WormBase Tree Display for Gene: WBGene00033088

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Name Class

WBGene00033088SMapS_parentSequencecb25.fpc2852
IdentityVersion2
NameCGC_nameCbr-cpn-3From_analysisInferred_from_orthology
Sequence_nameCBG12084
Molecular_nameCBG12084
CBG12084.1
CBP02942
Other_nameCBG_12084Accession_evidenceNDBHE601540
Public_nameCbr-cpn-3
DB_infoDatabaseNDBlocus_tagCBG_12084
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:02WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-cpn-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpn
RNASeq_FPKMWBls:0000002354.911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
526.001From_analysisRNASeq.briggsae.WBls:0000002.control_mean
556.009From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
667.084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
390.243From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
473.126From_analysisRNASeq.briggsae.WBls:0000002.control_median
492.062From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000312.9883From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
22.5885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
3.38816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
21.9802From_analysisRNASeq.briggsae.WBls:0000003.control_mean
39.9641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004256.687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
279.341From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
301.995From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
278.176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
289.513From_analysisRNASeq.briggsae.WBls:0000004.control_mean
292.339From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
318.368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027119.351From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
225.645From_analysisRNASeq.briggsae.WBls:0000027.control_mean
32.4224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
525.162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
160.671From_analysisRNASeq.briggsae.WBls:0000027.control_median
201.99From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
219.731From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035288.915From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038144.499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
298.7From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
376.611From_analysisRNASeq.briggsae.WBls:0000038.control_median
444.883From_analysisRNASeq.briggsae.WBls:0000038.control_mean
454.522From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
881.81From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:0000041246.969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
409.565From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
431.49From_analysisRNASeq.briggsae.WBls:0000041.control_median
453.415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
488.722From_analysisRNASeq.briggsae.WBls:0000041.control_mean
844.939From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
402.242From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
521.076From_analysisRNASeq.briggsae.WBls:0000041.control_mean
769.327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631417.56From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
595.964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
634.776From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
692.764From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
716.634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
811.54From_analysisRNASeq.briggsae.WBls:0000063.control_mean
704.699From_analysisRNASeq.briggsae.WBls:0000063.control_median
728.417From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
797.686From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101354.911From_analysisRNASeq.briggsae.total_over_all_stages.control_median
422.143From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
337.405From_analysisRNASeq.briggsae.total_over_all_stages.control_median
412.19From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Contained_in_operonCBOPA0304
Ortholog (30)
ParalogWBGene00029225Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033441Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033672Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035326Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036614Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038301Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039390Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Smooth muscle protein/calponin; CH domain superfamily; Calponin homology domain; and Calponin homology (CH) domain. Is an ortholog of C. elegans cpn-3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12084
Corresponding_CDS_historyCBG12084:bp194
Corresponding_transcriptCBG12084.1
Other_sequence (202)
Experimental_infoExpr_patternExpr1063052
Microarray_resultsGPL8303_CB6_WBGene00033088_A
GPL8303_CB6_WBGene00033088_B
GPL14143_CBG12084_56-115_0.900_17_C
GPL14143_CBG12084_232-291_0.931_3_A
GPL14143_CBG12084_291-350_0.950_1_B
MethodGene