WormBase Tree Display for Gene: WBGene00032291

WBGene00032291 SMap: S_parent: Sequence: cb25.fpc2441
  Identity: Version: 2
    Name: CGC_name: Cbr-cup-16 From_analysis: Inferred_from_orthology
      Sequence_name: CBG11110
      Molecular_name: CBG11110
        CBG11110.1
        CBP46442
      Other_name: CBG_11110 Accession_evidence: NDB HE601351
      Public_name: Cbr-cup-16
    DB_info: Database: NDB locus_tag CBG_11110
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:01 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 17 Feb 2017 10:42:58 WBPerson2970 Name_change: CGC_name: Cbr-cup-16
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cup
    RNASeq_FPKM: WBls:0000002 12.6362 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        28.3019 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        3.86782 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        5.7389 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        10.457 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        3.91951 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        4.82921 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 0.224405 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.448811 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.559684 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        1.23024 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.519468 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        0.723862 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.928255 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.299737 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.423042 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.582015 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.739574 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 0.267232 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.528782 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        2.10135 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        5.50803 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.01841 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        3.84072 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        9.05884 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 2.35373 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.272926 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        23.4389 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        7.48729 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        7.78136 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        8.07544 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        9.81864 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 11.8377 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        29.5582 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        4.01508 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        5.7308 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        6.88884 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        8.04689 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        18.8025 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        23.1919 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        35.4675 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        56.3329 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 1.07605 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1.86714 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        2.31276 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        2.46752 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2.61505 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        4.46659 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.38583 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        2.4589 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        2.46608 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 3.86782 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        6.12403 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        3.64604 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        7.5665 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (17)
    Structured_description: Automated_description: Is an ortholog of C. elegans cup-16. In C. elegans, cup-16 is involved in endocytosis and lysosomal protein catabolic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG11110
    Corresponding_CDS_history: CBG11110:bp194
      CBG11110:bp255
    Corresponding_transcript: CBG11110.1
  Experimental_info: Expr_pattern: Expr1050176
    Microarray_results: GPL8303_CB6_WBGene00032291_A
      GPL14143_CBG11110_1254-1313_0.563_224_A
  Method: Gene